Detail information of GWHGAAEX002150/evm.TU.scaffold_116.58
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|209886049|ref|YP_002289906.1| | 4.00E-58 | dna-3-methyladenine glycosylase 1 [Oligotropha carboxidovorans OM5] |
| nr | gi|672167502|ref|XP_008803717.1| | 1.08E-173 | PREDICTED: uncharacterized protein LOC103717200 [Phoenix dactylifera] |
| trEMBL | tr|M0U1R6|M0U1R6_MUSAM | 6.00E-156 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P19590_001} |
| TAIR | AT5G57970 | 3.00E-131 | DNA glycosylase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000112 | 2998120 | 3022713 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002150
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03352.12 | Adenine_glyco | 162 | 335 | 2.50E-61 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01246 | tag | Base excision repair | map03410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006284 | Biological Process | base-excision repair |
| GO:0006281 | Biological Process | DNA repair |
| GO:0008725 | Molecular Function | DNA-3-methyladenine glycosylase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.380 |
| SRR2545915 | Juvenile tuber | 27.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.740 |
| SRR5643514 | five period of Gastrodia elata | 18.680 | |
| SRR5643515 | five period of Gastrodia elata | 21.440 | |
| SRR5643524 | five period of Gastrodia elata | 23.890 | |
| SRR5643525 | five period of Gastrodia elata | 21.040 | |
| SRR5643528 | five period of Gastrodia elata | 47.020 | |
| SRR5643658 | five period of Gastrodia elata | 23.700 | |
| SRR5643659 | five period of Gastrodia elata | 16.990 | |
| SRR5643660 | five period of Gastrodia elata | 18.140 | |
| SRR5643661 | five period of Gastrodia elata | 17.220 | |
| SRR5643662 | five period of Gastrodia elata | 13.150 | |
| SRR5643663 | five period of Gastrodia elata | 11.950 | |
| SRR5643664 | five period of Gastrodia elata | 11.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.72 |
| Juven | Juvenile tuber | 22.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 46.49 | |
| Mother_Juven | Mother tuber of Juvenile | 51.43 |