Gene detail

Detail information of GWHGAAEX002160/evm.TU.scaffold_117.20

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|91787410\|ref\|YP_548362.1\|	1.00E-66	DEAD/DEAH box helicase [Polaromonas sp. JS666]
KOG	KOG0342	0	ATP-dependent RNA helicase pitchoune
nr	gi\|743886150\|ref\|XP_010910077.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 27-like [Elaeis guineensis]
Swissprot	tr\|Q84T03\|RH27_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 27
trEMBL	tr\|M0RML4\|M0RML4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P29900_001}
TAIR	AT3G18600	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000120	1607186	1630645	+

Transcript Sequence
>GWHTAAEX002160 CCTAAAACCCTACTAGAAACTTATATCTTATTGCCATGCCTCAGTTTTCCCTCTTTGAGATCTTTTTTTGCTATTCCCCGCCGACTCCTACTGCGACCTAAATTCTTAAATCCAAACATCAATCGGATTAACCAGATTCGGGATTCACAAGCATTTAAGCAAACGGCGGGATTTAAGACCCGGCTAGCAAAATTCTGTTTGGTTGGATTTAAGGTTTTAAACCCCTAAATTTTCTTAAATCCGAGCACGCCGTGCTTTGCAATGGAAGCATCCGATTTGAAGAAGAAAGCGAAGAAAAGGAAGAGCAGGCGGAGCTCCGAGGCCGAAGGTAAGGAGCTGAGTGCCCAGGTTGACGATACCGTTGAGGAGGAACGGCATGAGAATGATGAGAAAAGCCAAGACTCAAGCTATTTACCTGGCTGTGCGCATGAAAATGATGGTGATGGAGAAGCAACGGGAATTAATGGAACAGAAGGGGAAGAAGTTCGGACATCCAAGAAGCAGAAAAATGGGTTTAATAAACGGCTTGGAATCATGACCAATGAGCCCTTCGCCTCTCTCCCAATCGCAGAGCCCACAAAGGAAGCCATCAAGGAGATGGGTTTTGTGAATATGACCCAGATACAAGCTAGAGCCATACCTTCACTCTTGATGGGGAAGAATGTTATGGGGGCTGCAAGAACGGGATCTGGAAAGACTCTTGCGTTTTTAATACCAGCGGTTGAGCTACTTTATAATATCAAGTTCTCTGCGAGGAATGGTGCTGGTGCTATCATAATATGTCCTACTCGGGAGCTTGCCATTCAGACACATGCCGTTGCTAAGGACCTGTTGAAGCATCATTCTCAAACTCTTGGGATGGTTATTGGAGGTGCAGCGCGAAGAGGGGAAGCAGAACATCTTGCAAAAGGCGTAAACATATTGGTAGCTACTCCTGGCAGGCTTTTAGATCATCTTCAAAATACTAAAGGCTTCATATATAAAAATTTGAAGTGCCTAATTATTGATGAGGCTGACCGGATACTAGAACAAAATTTTGAGGATGATATGAGGCAAATTTTGAAGCGTTTTCCTAAGGAACGCCAAACTGCTCTGTTTACGGCTACACAAACTAAGGAGGTTGAGGATTTTGCTAAATTAACATTCACGGAAGCTCCTGTATACATTGGTGTTGATGATGGGAGATTAAAGGTTACAGTGGAAGGACTGCAGCAGGGTTACTGTGTGGTGCCGAGCAGCAAAAGATTTCTTGTTTTGTATGCTTTTCTAAAGAAGAATATGTCAAAAAAGATCATGGTTTTCTTTTCTTCATGCAACTCAGTTAAATACCATTCAGAACTTCTCAGATATATTCAGATAGACTGCTATGATATTCATGGTAAGCAAAAGCAGCAGAAACGGACTACCACCTTTTTTGATTTCTGCAAGGCAGACAAGGGTATCTTGCTGTGTACAGATGTTGCTGCACGTGGTCTTGATATTCCTTCTGTGGATTGGATTTTACAGTATGATCCTCCTGATGAGCCAAAGGAGTATGTACACAGAGTGGGTCGAACTGCTCGTGGGGAAGGTGGTGAAGGAAATGCTTTACTCTTTTTGTTGCCAGAGGAGTTGAAATTTGTTTCCTATCTCATAGCAGCTAACGTACCTGTGAAACAATACGAGTTTTCTGAAAAGAAGGTGCCAAATTTGCAGTCTCAACTGGAGAAATTAGTTGGGGAGAACTACTACTTGCTTCAGTCTGCTAAAGAAGCCTACAGATCTTATATATTAGCATACAATTCACATTCGATGAAGCAAATATTTAATGTGCACCATCTCAATCTTCAGGATGTTGCTGCGTCATTCTGCTTCAAGTCTCCTCCAAAAATAAATCTGAATGTGGAGAGTAATGCTTCCAAGTTTCGGAAGAAGATGCGGAAGCTTAATGGTGCCCGACAAGGTGGCTTCAGCTTTAGCAAAACAAATCAAGGAGACAAGAGGCAGTTCACGAAGCTATAACTAGATGGAAAGCTTAAGATTTTTAAATGGCAGTCTCGGATATTGCCTGTAAAAGTTATTTTGTTGCGTCCATTCTTTTATTGTTGCTCTATCTATTATTTACTACATTCGGCTAAATTGTTATAAGCCACTTGAATTATTCAGAATTTTAGCACAGTGAAGGTTCAGTCTTTGCTCGTTGGTTGTGTGCTCTATTTATAATATCTTATTAATTTAAAACGAACTATAAATTTTGAAGATGGTAATATTTATTGTTTGTCATCACAGCATTTTCCTTGAAGACTAATTGATT

Network for GWHGAAEX002160

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	119	289	1.40E-47
PF00271.30	Helicase_C	329	435	4.90E-23
PF13959.5	DUF4217	478	537	1.00E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.530
SRP064423	SRR2545915	Juvenile tuber	39.640
SRP108465	SRR5643513	five period of Gastrodia elata	28.270
	SRR5643514	five period of Gastrodia elata	28.170
	SRR5643515	five period of Gastrodia elata	25.830
	SRR5643524	five period of Gastrodia elata	29.430
	SRR5643525	five period of Gastrodia elata	14.600
	SRR5643528	five period of Gastrodia elata	16.840
	SRR5643658	five period of Gastrodia elata	11.700
	SRR5643659	five period of Gastrodia elata	46.760
	SRR5643660	five period of Gastrodia elata	46.350
	SRR5643661	five period of Gastrodia elata	40.400
	SRR5643662	five period of Gastrodia elata	45.440
	SRR5643663	five period of Gastrodia elata	38.830
	SRR5643664	five period of Gastrodia elata	38.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.830
SRP279888	Gastro	Gastrodia elata tuber	33.63
	Juven	Juvenile tuber	36.90
	Mother_Gastro	Mother tuber of Gastrodia elata	15.28
	Mother_Juven	Mother tuber of Juvenile	24.80