Gene detail

Detail information of GWHGAAEX002162/evm.TU.scaffold_117.23

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|116750628\|ref\|YP_847315.1\|	7.00E-68	class IV aminotransferase [Syntrophobacter fumaroxidans MPOB]
KOG	KOG0975	2.00E-114	Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
nr	gi\|743771433\|ref\|XP_010916005.1\|	1.68E-151	PREDICTED: D-amino-acid transaminase, chloroplastic-like [Elaeis guineensis]
Swissprot	tr\|Q8L493\|DAAA_ARATH	7.00E-119	D-amino-acid transaminase, chloroplastic {ECO:0000303\|PubMed:18318836} (Precursor)
trEMBL	tr\|M0RE35\|M0RE35_MUSAM	4.00E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P00080_001}
TAIR	AT5G57850	2.00E-114	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000120	1739301	1741844	+

Transcript Sequence
>GWHTAAEX002162 GAAAGAGAAGCATCAAGCATCCTATACACATGGAAAAACAACTGAAGATGTACCTTTTCAAGACTCTGCTGTTCCCTCGAAATGTTTTCCAGTCAAAAAATGAAATCAACGCGAAGCTATAATAATAAACAGAGTATTAAAATCCAGCGAGCGAAGAGAAGGAGATGCGCCGATCGCTCCTCTCCAAAGAGAAAGCTAAAACAGCGGAGCTATGGCGCTAATTCCGTGCCAGCCAAGCCCGCCGCCGAGGCTTCCAAAACCTTCGTCGCCTTCTCCTCCGTGCTTTACCTCCCCTTCCCATCCCTCTTTTTCTCTCAAGGGATCATCTTCCTCTATTAATAATAACCAGAATCAGGTGCTCACCCATGGCCCAGCAGGCTCCCTCCCCGGTCTCTGCGTTCCTGTCTATTCTACTTCTCAGGTGATCCAGAAGATGAGAGAAGAATGGGGAGACGGCGGGGCGGCGGCAGGGGGGCATCCGTACACAGCAATGTACTCGAGCTTGATCGGCGGGGTGATTCTCGATCCGGCGCTGATGGTCATTCCGATGGACGATCACATGGTCCACAGAGGTCACGGCGTTTTCGACACGACGATGCTCATGAACGGATACCTATATGATCTGGACTCGCATTTAGACAGATTGCTCAGATCCGCTTCAGCAGCAAAGATAATCCCACCTTACCCCCGCGAGACTCTCAAAGGAATCCTCCTGCTCCTAGCAGCAGCGTCGAAGCTCAGGACAGGCTCAATCCGATACTGGCTGAGCTCCGGTCCGGGGGACTTCTCAGTATCTCCCCCCAGCACTGCAAGCCCGGCATTCTACTCGGTGGTCGTGACCACAAAGTTTAATAGGGAACTAGAAGGTGTCAAGGTCATTACTTCAACAATTCCCGCAAAACCTATTAAATTTGCAACAATGAAGAATGTCAACTACCTTCCCAATGCACTTTCAAAGATGGAGGCAGAGGAAAAGGGTGCCTATTCCTCGATCTCGATTGATGATCAGGGCTATGTTGCCGAGGGTCCTAACTGCAACGTTGCATTTGTGAGCAAAGAAAGAGAACTTGTTCTTCCTAAGCCTGACAAAATCCTGCATGGCTGTACTGCCAAAAGGTTGCTCGTGCTCGCAAGCAAGCTGGTCGGGAAGGGAATTCTGAAGGGTGTGCTAACTAGAGATATATCAGTCGAAGAGGCAAAGGCTTCAGCTGAAATGATGTTTGTCAGCAGTTTGATTCCAATAATGCCTATTGTTGACTGGGATGGAGAGCCCATTGGAGATGGAAATGTGGGAGAAGTGACCCGAGCAATCTCAGATATTTTTTGGGAAGATGTTATTGCTGGGCCACAGATGCTGAGGACCAAAGTAGCGTACAATTAATGGAAACATACGAGAGATGCATGCACAGTAAAAATGCTAGATGTATGCAGTTCTCCAAGGGTGTTGAAACTCGTGTTAAAGTAGGTAATAAGTATGGTTCTATTCCAGGTCCATTACTGAGTGAGCGGAATAATGATTAGAAGAATCAGCTAACTTTTTTAATATGAAGTTACATTATTGCATGATTAGCACTTGAGCATTGATATGAGATGA

Network for GWHGAAEX002162

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01063.18	Aminotran_4	123	348	1.10E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18482	ADCL	Folate biosynthesis	map00790

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.760
SRP064423	SRR2545915	Juvenile tuber	20.200
SRP108465	SRR5643513	five period of Gastrodia elata	9.190
	SRR5643514	five period of Gastrodia elata	17.040
	SRR5643515	five period of Gastrodia elata	15.750
	SRR5643524	five period of Gastrodia elata	23.960
	SRR5643525	five period of Gastrodia elata	2.760
	SRR5643528	five period of Gastrodia elata	4.480
	SRR5643658	five period of Gastrodia elata	2.750
	SRR5643659	five period of Gastrodia elata	5.640
	SRR5643660	five period of Gastrodia elata	6.050
	SRR5643661	five period of Gastrodia elata	4.350
	SRR5643662	five period of Gastrodia elata	5.720
	SRR5643663	five period of Gastrodia elata	3.480
	SRR5643664	five period of Gastrodia elata	6.420
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.790
SRP279888	Gastro	Gastrodia elata tuber	2.69
	Juven	Juvenile tuber	1.94
	Mother_Gastro	Mother tuber of Gastrodia elata	3.15
	Mother_Juven	Mother tuber of Juvenile	2.93