Detail information of GWHGAAEX002179/evm.TU.scaffold_118.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08004.00E-122FOG: Predicted E3 ubiquitin ligase
nrgi|672118470|ref|XP_008782446.1|0PREDICTED: E3 ubiquitin-protein ligase SIS3 [Phoenix dactylifera]
Swissprottr|Q8GYT9|SIS3_ARATH7.00E-175E3 ubiquitin-protein ligase SIS3 (Precursor)
trEMBLtr|A0A072UPV9|A0A072UPV9_MEDTR0RING-finger ubiquitin ligase {ECO:0000313|EMBL:KEH31849.1}
TAIRAT3G479904.00E-122SUGAR-INSENSITIVE 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000126901257971157+
Transcript Sequence

Network for GWHGAAEX002179

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_22332751.40E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.990
SRR2545915Juvenile tuber26.060
SRP108465SRR5643513five period of Gastrodia elata28.730
SRR5643514five period of Gastrodia elata27.920
SRR5643515five period of Gastrodia elata24.610
SRR5643524five period of Gastrodia elata27.960
SRR5643525five period of Gastrodia elata44.370
SRR5643528five period of Gastrodia elata40.470
SRR5643658five period of Gastrodia elata45.050
SRR5643659five period of Gastrodia elata35.780
SRR5643660five period of Gastrodia elata38.450
SRR5643661five period of Gastrodia elata37.720
SRR5643662five period of Gastrodia elata39.840
SRR5643663five period of Gastrodia elata41.070
SRR5643664five period of Gastrodia elata43.360
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_141.960
SRR6049655Rhizomagastrodiae_C368-T10_good_132.570
SRR6049656Rhizomagastrodiae_C368-T07_good_136.300
SRR6049657Rhizomagastrodiae_C368-T07_good_135.650
SRR6049658Rhizomagastrodiae_C368-T04_good_141.360
SRR6049659Rhizomagastrodiae_C368-T04_good_140.700
SRR6049660Rhizomagastrodiae_C368-T01_good_134.370
SRR6049661Rhizomagastrodiae_C368-T04_good_137.380
SRR6049662Rhizomagastrodiae_C368-T01_good_137.890
SRR6049663Rhizomagastrodiae_C368-T01_good_139.010
SRR6049664Rhizomagastrodiae_C368-T10_good_138.380
SRR6049665Rhizomagastrodiae_C368-T10_good_138.380
SRP279888GastroGastrodia elata tuber 33.93
JuvenJuvenile tuber30.05
Mother_GastroMother tuber of Gastrodia elata 21.72
Mother_JuvenMother tuber of Juvenile 24.06