Gene detail

Detail information of GWHGAAEX002180/evm.TU.scaffold_118.9

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743838597\|ref\|XP_010936747.1\|	1.22E-152	PREDICTED: uncharacterized protein LOC105056300 [Elaeis guineensis]
trEMBL	tr\|M0TQE7\|M0TQE7_MUSAM	2.00E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P14440_001}
TAIR	AT1G23790	1.00E-109	Plant protein of unknown function (DUF936)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000126	972329	975118	+

Transcript Sequence
>GWHTAAEX002180 CGAAAATTTAAAATGTCCTCGCTCGTTTTAGATACTAACCGTCGCGGTGATTCAAAAAGGCGAACGACGCTTTCTATATTTAGGTGACGAAGAAAATCCCAAAATTCTATATACATCAGCAAGGTTAATAATTTTTCCAATTTATCGCCTCAGGATATGCTCTTATGCACTGAAAGTTATCCTTGCGCGCGCTTGCTTCTTCTTTCCGTCCGGGCATTTGAGCATCATGGTGTTATTATCACCTGGGATTCTACTGAAGCTCTTGGATGGAATGAACTCTGGAGCGATAAAGCCTGTGGGCGAGCACCGAAGCGCTCTTCTTCAAGTGACCGACATTGTACCGGCTGATCTTGATGAGAAGGATCTATTGCCGAAACATGGATTCTATATCAAAGTGTCTGATTCTGCGCATTCAATTTATGCCACTTTACCCCTTGATCAAGATGAACTCGTTCTCAGCAACAAGATTCAGCTTGGTCAGTTGATTTATGTTGATAGACTACAGCCAGGGACACCTGTGCCTGTCATCTACGGTGTAAAGCCGCTTCCTGGAAGGCATCCATTGATAGGAACTCCTGAACCGATTATTCGAGTCGGTAAACATGGAGATGAAATAGATTTTAAAGGGGAGATATCCAGGCATAGAGGCTCTTGGGAGTCGGAGAAAAAATTAAAAGCTGGAGCATCTTCGCCTTTACTTGTTAATCCAACAAGTTCTACTAAATCAGAGAAGACAGGCAGCTTGAGATCTTCTGTTATTGGAGTTGTTCATCCAAAGATAGAAGATTTAAAAGTAACTAGATCGTGTTCAACAAGCAAAAGTTCTGTGTTGTCAAAGCTACAGAAGGAAGGAAACAGTTCAGGAAAGGTGTCAGAGATTGCAAAGAGTCCCTTCTCCACTGATAAAAAATTGCTTCTTGCATCATCTAATGTTAGAATAAGAAGACTGGTTGAGTCAAATGAATGTAATAAAGAAACCAACAGCCGCTTGGAGATGCCTGGAAAGCTTACTCTTCTTCAAAAGGGGGCTATGATGAATAGAGAAAAAGCTCAAAAGCTGGCACTCCAAGCACTGAGAGATACTTCTGCTGCGGAGAATCTTCTTAGAGTACTGAAGATTTTCTCGGACTTGATTATGACAGCAAGACCTGCTTCGCCTGCCCCTGTTCTCGGGCGATACCTCCACTTTCATGAGGAGATCTTGCAGGTTGTGCTTGATATGGAGAAGATTCATGCAGCAACACTAACTTCCAAAGAAACTGAGAAGGAAAATGAGGATCAGTTCATGTTAGAAGAGATCCCAAATAATATTAATTCTTGCAAGAAAAAAGGGTACGACATGAGACTGAATAATGGTAGCCAGCAGAGAGCAGATGCACTCAAGAAGACTTCTACTGACAGAAAAATTCCAGAGGCTATACTTATGGTTCAGAGAAATATACTGTTTCCTTCCAGCCTAAGCAGCTCAATTAAATTGGCTAAGGAGGTGCAGACAGAAGCTGGAAATTGGTTCATGGAATTCTTAGAGGCAGCAATAGAGTTGGGAAAGTGGAACAAAGGAGAGGAGCAGAGTTCAGGAAAGTGCTCTCAGTCACTAATACTTAAGGTTATCAACTGGGTAGAGGTGGAGCAAAGCAACAGCTGCAAGAGGCCAGTTCATCCCAAAGCAGCACTGGTAGCCAGAAAGTTAAGAATCAAGGCAAAAAATCCTCAATGTTGAGAGCTTGTTGTTTTAAGGTTGTGCGACCCCAAGTCTTTTAAGAATGAGGAATGCAGTTTTTTGTTTGAAAGCATTACTTTTTTTTTATGTATATAAAGAATGCTTTCGGATTTAGCTTCATATCGATTAGTTGAAAAAATATTGCTGTGTAGATAACAATCC

Network for GWHGAAEX002180

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06075.11	DUF936	4	122	2.30E-56
PF06075.11	DUF936	137	349	1.50E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.160
SRP064423	SRR2545915	Juvenile tuber	0.050
SRP108465	SRR5643513	five period of Gastrodia elata	0.340
	SRR5643514	five period of Gastrodia elata	0.980
	SRR5643515	five period of Gastrodia elata	0.160
	SRR5643524	five period of Gastrodia elata	0.490
	SRR5643525	five period of Gastrodia elata	0.040
	SRR5643528	five period of Gastrodia elata	0.040
	SRR5643658	five period of Gastrodia elata	0.130
	SRR5643659	five period of Gastrodia elata	0.070
	SRR5643660	five period of Gastrodia elata	0.260
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.040
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.670
SRP279888	Gastro	Gastrodia elata tuber	0.05
	Juven	Juvenile tuber	0.09
	Mother_Gastro	Mother tuber of Gastrodia elata	0.23
	Mother_Juven	Mother tuber of Juvenile	0.40