Gene detail

Detail information of GWHGAAEX002186/evm.TU.scaffold_118.25

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743874517\|ref\|XP_010907097.1\|	PREDICTED: uncharacterized protein LOC105033849 isoform X1 [Elaeis guineensis]
trEMBL	tr\|A0A059C2J6\|A0A059C2J6_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW72693.1}
TAIR	AT2G35610	xyloglucanase 113

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000126	1636152	1670360	-

Transcript Sequence
>GWHTAAEX002186 CCTCGATCCCTCTCCTCCGGCTCGGCTCTTATAAAGAGCTTTCCGATCTTGCATCCAGCAACATCTATTCCTCTACTTCCCCAACTTGGTTTTTCTAATTTGTAAAGCGCCTAAAGATAGTTTTGGATTTCAGGATTTGCGCCTAAAATAGTTTTGGAGCAATGTTTGAATTTGAGTGGTATTGGAGTTAAAATTCAAACGCCTCAGGAAACGAGGAGATCCATCTGTTCATTCAAGGGCCATCACCTTCGACTATTTAATTAAACAAAAAAAAGTTTATATAGTCAGAATTCCTAACAAACCAGTTGACCCAAAGCTTTGCATGCGTATTTTGGTTTCCCTCCGTTGGAATCGGCTGGATTCATACTAGGGCTCTTTCTCATTACATCCAGTGCCGGATCTTTACATAGTAGCGGTTCACTGCATTCACCGATTTCGGCATGGCGCTGTGCAGCTCTCTTAAAGATGTCTCATCGGGAAAGCCTCTCTTCACGGCGGTTTACATCACGGTCTTCGCCGGAATCCTCTTTTTCGCTCTCTTTATCGTCTTCTCCCTTCACTCGACTTCCAATAGCGACAGCAACAAATCGTGGCTCTCCTTCTCTTCTTTAGCTCTTCCATCTCAGGTAGATGCCATCAGCTTTCAGAACAAATCTGCTAGTGTTAGTAATTCTACCGACGCTGTTCAAGTAAACTTCCTGCCAACAACATCTGCTAGTGTTAATAATTCTACCGATGCTCTTGGAGGAAACTTTCTGACAAGAGCTATATGGGATCCGCCTTCTCCCGATTCGAATATTCCGAACTTAACGTCCTTCAGGCTCACCAAGGAGATGGTGGAATATCGGGCTAAAGATAATGTCATAATCGTAACATTTGGAAACTATGCTTTCATGGACTTTATCTTGAATTGGGTCAGGCATCTGACCGATCTTCATGTCTTCAACCTTCTTGTAGGTGCAATGGATACCAAACTGTTAAGGGCCTTGTATTGGACAGGTGTTCCTGTTTTTGACATGGGAAGTAATATGAATACTATTGATGTTGGATGGGGGTCGCCAACTTTTCACAAAATGGGAAGAGAAAAGGTTTTCTTGATAAATACGCTTTTGCCTTTTGGCTTCGAGTTTCTTGTGTGTGATACTGATATGGTTTGGCTAAAGAATCCACTTCCATATATTGCTCGTTTCCCTGAAGCAGATCTTTTAACTTCAAGTGATCAGGTTATTCCTACTGTCACCGATGACAGCCTAGAGGCATGGCAATATGTAAGTGGTGCTTACAATATTGGAATTTTTCACTGGCGTCCAACTGGTCCTTCAAGAAAGCTTGCCAAAGAATGGAAGGATCTCCTTTTAGCCAACGAGAAGCTATGGGACCAGAGTGGATTTAATGAGCTTGTTCACAATGTTCTAGGTCCATCAGTTGAAGATGAAAATGGTCTTGTTTTTGCGTTTGATGGAACTCTCAAATTGGGAATTTTACCAGCAAGCATATTTTGCAGTGGGCATACGTATTTTGTCCAATCAATGTATCAGCAGCTCAGATTGGAGCCTTACGCAGTGCACACTACTTTTCAGTATGCTGGAACTGAAGGAAAGCGCCATAGACTACGTGAAGCCATGATTTTCCATGATGCACCAAATTATTATGATTCCTCAGGAGGTTTTTTGTCATTCAAACCGAATATTCCAAAGGATTTGTTGTTAGATGGCCCACATAATCTTGAATCTCATTTTACTTTAGTTAATTACCAGTTGAAGCAAATAAGAACTTCACTTGCTATAGCGTCATTGGTAAATCGAACTCTGGTAATGCCTCCAATGTGGTGCAGACTGGACAGATTGTGGTTTGGACATCCTGGAATTATGGAAGGAACTTTAACCAGACAACCTTTTATCTGTCCTATGGATCATGTATTTGAGGTAAATGTTATGCTTAAAAACCAAGTTGTGGAAGAATTTGGACAAACAATTGATTTCAGGGAATACTCCTTCCTCCAGAACCCAAGGCTTCCTAAACAGGTTAAGGAATCATATCTTGAAGTTCAGCTGTGCGAGCAGCAATCACCAAAATGCCATTCAACCAATCAAACTGATAGAAAAAGATTCACCAGATTGCTTAAGCACAGTACCCAAGAAATGATAACAGATTTTTTTTCGTTGTACAAGGATGTCAAAGTGATAGAGTTTTCATCCATGATGGATGCATTTCAGGGGTTCTCTAGCAAGGTGACAGAGAAAAGGTTCAGAAATCGTATGAAGGGTTACGTAGGAATATGGTGCTGCGTGATGAATAAGGAACCTGGCCATATATTTTACGACATGTATTGGGATGAAAAGCCTGATTGGAAACCGGAGCCAGGCTTGCGAAGCTGACCGTTTTCCTTCTTTGCAGATCAATTGTTTATTCACCATCACTCCAAATTCGTTGCAATTTCAGGTCGTCCGCTCACAGATGCTCTATATTTATGTTTAGATATATTGATTTGGATAGATATGTTGTATTAATTTGTACGAGTGTTGTCACCGGTGTTGCCAAGTGTTGTATTATATGTACCGCCATTGATCGGATTTGCTCTAATATTATTACCTCATGCATATTTCAATAAGTTTTGACGGAACATTCTTTACTGTAGAAAATTTTCAGATAGGGCTCTCTAAAGCTGTTATTAATTTAATTTACATTATGAGTTGCAAGCATA

Network for GWHGAAEX002186

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03407.15	Nucleotid_trans	168	391	5.70E-52

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT77

KEGG pathway

KO	Enzyme	pathway	mapID
K20784	XEG113	Other types of O-glycan biosynthesis	map00514

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.560
SRP064423	SRR2545915	Juvenile tuber	18.110
SRP108465	SRR5643513	five period of Gastrodia elata	17.800
	SRR5643514	five period of Gastrodia elata	16.070
	SRR5643515	five period of Gastrodia elata	16.630
	SRR5643524	five period of Gastrodia elata	17.580
	SRR5643525	five period of Gastrodia elata	17.440
	SRR5643528	five period of Gastrodia elata	17.260
	SRR5643658	five period of Gastrodia elata	19.520
	SRR5643659	five period of Gastrodia elata	14.200
	SRR5643660	five period of Gastrodia elata	13.520
	SRR5643661	five period of Gastrodia elata	13.070
	SRR5643662	five period of Gastrodia elata	12.750
	SRR5643663	five period of Gastrodia elata	14.030
	SRR5643664	five period of Gastrodia elata	11.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.710
SRP279888	Gastro	Gastrodia elata tuber	13.78
	Juven	Juvenile tuber	16.10
	Mother_Gastro	Mother tuber of Gastrodia elata	23.79
	Mother_Juven	Mother tuber of Juvenile	21.09