Gene detail

Detail information of GWHGAAEX002188/evm.TU.scaffold_118.31

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2300	Uncharacterized conserved protein
nr	gi\|695056727\|ref\|XP_009416598.1\|	PREDICTED: uncharacterized protein LOC103997165 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0TY95\|M0TY95_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P07360_001}
TAIR	AT5G51340	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000126	2103563	2125491	-

Transcript Sequence
>GWHTAAEX002188 AAGTTCTTTTTGTCTCAAATCCGTTCCGCCTCCTCCGCCACTCCAAATCGAGCTTGCATTGCACCTCCAAACTCTATACTTTAACCGTGATTTCTCAGGCGATGGAACAAGTGGCGGAAGGCCTCTGGGTTCTTGCCGACGACTCTGAACGCCGGCGTGATTTCGCAGGAGCAGTAAAATGTCTGGAAGCCTTATGTCAAAGTGGTACTTCCCTCCTTCCCATGATTGAGATCCGCACTCGAATCCGCCTCGCATCTCTTCTTTTTTATCACTCTCATAACCTCAACCACGCCAAAGCCCATCTCGAGCGCGCACTCCTTCTCCTTAAATCCACTCCATCGGCTCTCCCTCTCAAGTTCCGCGCACATTCCCTCCTTTCCCGCTGCTACGATCTTATCGGCAACGTCCCGCAGCAGAAACATACCATCCTTCGAGCACTTGCGCTACTTCGATCTTCCGAGCCCTCCGCGCTCCCCCCCTCCGCTGCGCTTCTCTGGTCGTGCAACTTTCATTCCCAACTTGCGTCGGCTCTGGTCATCGAAACTGATTACCCCGCAGCACTGAAGGCACTTGACGAGGGTTTCTCGGCCGCTTCTGAGCTGCAGCATCAAGAGCTGCAGATGTTTTTTGCTGCATCTACGCTTCACGTCCATCTTTTCCACTGGGACGATCCAGCCACCGTCGAAGCCGCAGCCCGGCAGTCTAATGAAATCTGGGATTCGTTTTCTCCTGATTTGAAAATACGGTGCAGGGGTCTTTTGTTTTACAATGAGTTGTTGCAGACGTTCTACCTGTTCAAGACATGTGACTATAAGAGCGTTACACAGCATGTTAACAGGCTGGACTTTGCGATGAAGGAAGATCAGAAGCAGGTCTCCCATGTTAAGGAGCTGGTTGGGCAACTTAATGCAGTGAATCAGAGTCTCGCACAGAAGAGCTTGTTGGGAATATCAAATGTTGCTTTGAAGGAGAAGCAGGACCTATTACATGACCAGCTGAGAACTGCTACTGGAATGGATGAAGAGATGTTGGGCTTTGAGGACAAAATTCTTTTGGGACCTCCCCCATTGGATGGTGAATGGTTGCCCAGGGGTGCTGTTTATGCCCTGGTGGATCTTGTGGTTGTTTTGCAGGGGCGTCCTAAAGGAGTATTCAAGGACTGTGGAAAGAGGATACACTCTGGCATGAAGTTGATTTTTGAGGAGCTACAAAAACTTGGCATCGGTGTCAACCAAAGAGAGATGGACATTCAGCAGTCAGATGTATGTATAGCTGGCCAATATTTATTACTCCTAATGCAATTTCTTGAGAATAAAGTAGCGCTGGAGCTTACTAAGTCTGAATATATTGAAGCTCAAGAGGCGATAGTACAAATGAGAAATTGGTTTATTCGTTTTCCAACAATATTACAAGGATGTGAATCCATTATTGAAATGCTCAGAGGACAGTATTCTCATTCGGTTGGTTGCTTTCAAGAGGCTGCCTTTCATTTCTTGGAGGCTACAAAGCTCACTGAGAGCAAGTCGATGCAATCTATGTGCCAAGTCTATGCAGCTGTTTCTTATATATGTATTGGCGGTGCCGAAGCATCTACACAGGCGCTAGATTTGGTAGGACCAATTTACAAAATCATGGATTCATTTGTTGGGGTGCGAGAAAAAACTTGCATTGTTTTTGCTTATGGACTATTATTGATGAGGCAACATAATCTGCAAGAAGCCAGAGTTCGTCTAGCTAGTGGCTTGAAAATAGCACACCAACAATTGGGGAACATTCAACTTGTTTCTCAGTATTTGACGATACTGGGTACTTTAGCGCTGCAACTACATGACACTGAACAGGCTAGGGAGATTTTGAAATCTTCATTAACACTAGCCAAGACACTCTATGATGTTCCAACACAGACCTGGGTGCTTTCTGTCTTAACAGATTTGTACAAGGAATTAGGTGAGTCAGCAAATGAAACGGAGAACTCCGAATATGAACATAAAAAGGAAGATGATTTGCAGAGGAGGTTGTCTGAAGCTCTCTCACGATCTCTTCATGTTGAGCTGATTGAGAGGGGCCGGTTCAAAGTTCATGCTCTTAACGGTGTTGACATAAGGCGTGGTGCAAGCGGCCCTACAAATTCGGATCTGGAAATTCCAGAATCTGTTGGCTTGGCAACCCCCGCACCCGCTCCCGTATCGCGGCTTATCGGCCTCGATTCTGTGAGGCGCAGTGCAAGGAGAAAAATAGGCAAATAATATGTTCTAAGAAGAAGAGCGCAAATTCAACAGCCTCGACTACAGCACTATTCACAAAACATCAATATTATACATTTGTGTATATACTAGAGAGGAAGAAGTACACCCCTAATTGTAAAAACATCTATATAATTGTATTCATGTGGATGCAAGCATGTGTGTGTGCTGTTTATGCCCCAACATTAACAACAAAAATAATAGCAAATTTTAGTCCATTATGTAAAAAAGTTTATTATATGAATAGTTTTGTTTTCATTGAAGTCCCTCCCTAAGATTCA

Network for GWHGAAEX002188

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10345.8	Cohesin_load	24	185	5.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007064	Biological Process	mitotic sister chromatid cohesion
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.140
SRP064423	SRR2545915	Juvenile tuber	12.610
SRP108465	SRR5643513	five period of Gastrodia elata	10.740
	SRR5643514	five period of Gastrodia elata	11.660
	SRR5643515	five period of Gastrodia elata	10.670
	SRR5643524	five period of Gastrodia elata	12.750
	SRR5643525	five period of Gastrodia elata	7.690
	SRR5643528	five period of Gastrodia elata	5.670
	SRR5643658	five period of Gastrodia elata	9.690
	SRR5643659	five period of Gastrodia elata	9.950
	SRR5643660	five period of Gastrodia elata	9.670
	SRR5643661	five period of Gastrodia elata	9.780
	SRR5643662	five period of Gastrodia elata	7.270
	SRR5643663	five period of Gastrodia elata	9.360
	SRR5643664	five period of Gastrodia elata	9.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.880
SRP279888	Gastro	Gastrodia elata tuber	12.37
	Juven	Juvenile tuber	19.91
	Mother_Gastro	Mother tuber of Gastrodia elata	9.44
	Mother_Juven	Mother tuber of Juvenile	19.30