Gene detail

Detail information of GWHGAAEX002190/evm.TU.scaffold_118.36

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|116626608\|ref\|YP_828764.1\|	2.00E-22	hypothetical protein Acid_7571 [Candidatus Solibacter usitatus Ellin6076]
nr	gi\|743783194\|ref\|XP_010921344.1\|	0	PREDICTED: uncharacterized protein LOC105044938 [Elaeis guineensis]
trEMBL	tr\|F6HZD5\|F6HZD5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60050.1}
TAIR	AT4G01870	0	tolB protein-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000126	2560987	2563336	+

Transcript Sequence
>GWHTAAEX002190 CTTAAATAGCACTCTAAAAAGATATAATTTTATTTTTATAAAAAATAAAAATTAAATCATAATTATCAAATAATTAAATAGTTTTAATTTAGTTAATATTTTAATAATAAATTATAATTATAACATTTAATTTTGTGCCTATTTATTTGGCTACTGGCTGCACCGCAGAGGGCAAGCAATCACAACAACGCAATGGATGCGACGGGGATCATTGTCTTCACTACCGTCGGAGTGATCGACTACGGCTTCGACGTCTTCTCTACGGCCCTCCCGCCCGGCCTCGCTGCAGGTTTAACGGATACCCGCCATACCGATGGCGTCTCCGTTAATTTCAACGCCCAGTTCGCCGATGACGGTGAAGAATCCGTCGTCTTCGTCTCCGAGCGAACCGGCTCGGCCCAGCTTTTTTATCAGCCCTGTTCGCCCGGTTCAAAACCCAAACTTTTGCCTACAAACCCAAAAAGCCTTTTCCACGACCGGCCCACTATCCGGAACGGCCGCTTATTCTACGTCTCGGCCCATGAACCGCCGTCGCAGAATTTCAAGAGCTGGGCGGCGGTCTATTCGACCCGGCTCGACACGGAGGAGACTGTCCGACTAACGCCGGCTGGATTCGTGGACTTCAGCCCGGCCGTTTCAGAGTCGGGCCAGCTCGTTTCCGTGGCGACCTACGGGCAACGGCCGTGGAAAGGAGATTTCCGAGTTCTCAGCACCGAGGTCGCCGTCTTTCCTGTCTCCGACCCTCGGCGCCGGACAGTCGTCTCCGGCGACGGCGGATGGCCGTCCTTTTCCGGCGAGACCACAATCTTTTTTCATAGAAAGGCCGACGACGGCTGGTGGAGCGTCTACTGTATCGATTTAGACGAGAATCAAAACCCCGAGGGTGCTCCTCGCCGTATTACCCCACCTGGCGTGCACGCCTTCACGCCGTCTGCGTCGCACGACGGCAAGCGCGTCGCCGTGGCCACGCGCAGGAAGGGGAGCAATTTCCGCCACATCGAGATATTTGATCTCGAATCGGGGCGATTCTTACCGATTACAGAGAGAGTGAGCCCTAATTTCCACCACTATAATCCGTTCTTCTCCAAGAACTCGACCCGGCTCGGATACCACCGTTTCCGGGGGGAATCCGAGGAGATGAAACCAGATATCCAACCTGTGACTTCTCCGGTCGACGGGCTCCGTCTTCTACGGCTTCAAGGCACATTTCCATCATTTTCCCCCGCCGGAGATCTCCTTGCAATTACCGGCGACTTTCTGAACTCATCCGGCCTGATGATCCTCCGATCAGACGGCACAAAACGGTGGACTCTGCTCAAAACGCCGGCGGCATTCTCGACGGCATGGAGCCCTAAGGAGAAGGGCGTCATCTTCACGTCCATTGGTCCGATCTTCGAATCGAACACAACGACGGTTGAGATCGCGCGTGTGTCTTTCAACCCCGAAGATCTGAAGGCTGAAGACGGCGGCGAGGAAGTGCCTGCCAGGGTGAAGATCCTCACCCGTGGCGGTGCGGGCAACAGCGCGTTCCCTTCGTGCTCCCCGGACGGGAGGCAGGTCGTGTTCCGATCCGGACGATCCGGCCACAAGAACCTGTACATCATCGACGCCGTCGATGGAGAGTTCGCTGAGGGCGGAGGAATCCAACGGCTGACGGAGGGGGAATGGGTGGACACAATGCCGTCCTGGTCGCCGGACGGGGACCTCATCGCTTTCTCATCAAACCGGCACAACCCGTCGGACCCGGACGCGTTCAGCATATATTTGGTTCGACCGGACGGGTCGGATCTGCGTCGGGTGCAGGTGGCAGCCGATGATGCCATCGATCGGGAGAGGATCAACCACGTGTGCTTCAGCCCGGATTCGAAGTGGCTCCTCTTCACGGCGAACCTTGGCAGCGTCTCGGCGGAGTCGGTGTCGCTGCCGAACCATTTCCAGCCCTATGGGGACCTTTGGATATGCCGCCTGGTCGGAACCCAGCTAGCCAGGCTTACATGCAACGCTTACGAGAATGGCACGCCAGCGTGGAACTCGTCTAAGGATAAGGGCCTGCTCTCCGCACACTTTCCAGCAGTCGGTGAGTCTCTGACAGGCCAATTTGAGGAGCCTACGTGGCTCGCATGTGATGTCTGATGCTAGTATATGTTTCCACCAGCAGCCACGGCTTAGCATATAATAAATTATTCATCTTATTATAATATTTTATTATTAAAAATGAGCTCATCTCTGTTGAGTATATCCGCTCTTTACGAGAATATATCCATTCGCTCAGCTTGCCGTCTGTATCTTCCTCTCTGCGCCAACATTTTTTGAATTCTGAAATTTTAATCAAAAAATATGTTGCTAATGG

Network for GWHGAAEX002190

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07676.11	PD40	236	264	0.062
PF07676.11	PD40	442	470	0.0075
PF07676.11	PD40	488	524	2.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.970
SRP064423	SRR2545915	Juvenile tuber	5.930
SRP108465	SRR5643513	five period of Gastrodia elata	40.380
	SRR5643514	five period of Gastrodia elata	68.390
	SRR5643515	five period of Gastrodia elata	45.630
	SRR5643524	five period of Gastrodia elata	50.170
	SRR5643525	five period of Gastrodia elata	11.440
	SRR5643528	five period of Gastrodia elata	7.830
	SRR5643658	five period of Gastrodia elata	9.460
	SRR5643659	five period of Gastrodia elata	19.410
	SRR5643660	five period of Gastrodia elata	22.390
	SRR5643661	five period of Gastrodia elata	27.100
	SRR5643662	five period of Gastrodia elata	14.910
	SRR5643663	five period of Gastrodia elata	24.060
	SRR5643664	five period of Gastrodia elata	17.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	80.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	92.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	83.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	75.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	102.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	113.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	78.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	72.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	120.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	120.130
SRP279888	Gastro	Gastrodia elata tuber	16.62
	Juven	Juvenile tuber	11.26
	Mother_Gastro	Mother tuber of Gastrodia elata	21.56
	Mother_Juven	Mother tuber of Juvenile	18.61