Detail information of GWHGAAEX002191/evm.TU.scaffold_118.37


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|459287275|ref|YP_007510432.1|4.00E-11conserved hypothetical protein [Bradyrhizobium oligotrophicum S58]
KOGKOG21430Uncharacterized conserved protein
nrgi|695033445|ref|XP_009404211.1|0PREDICTED: fanconi-associated nuclease 1 homolog isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q5SNL7|FAN1_ORYSJ0Fanconi-associated nuclease 1 homolog
trEMBLtr|J3MBP4|J3MBP4_ORYBR0Uncharacterized protein {ECO:0000313|EnsemblPlants:OB06G14380.1}
TAIRAT1G483600zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012626155962672749+
Transcript Sequence

Network for GWHGAAEX002191

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08797.10HIRAN2283091.60E-10
PF08774.10VRR_NUC8489658.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15363FAN1, MTMR15 Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0016818Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003676Molecular Functionnucleic acid binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0008270Molecular Functionzinc ion binding
GO:0004518Molecular Functionnuclease activity
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms34.470
SRR2545915Juvenile tuber20.410
SRP108465SRR5643513five period of Gastrodia elata13.090
SRR5643514five period of Gastrodia elata11.600
SRR5643515five period of Gastrodia elata12.060
SRR5643524five period of Gastrodia elata11.630
SRR5643525five period of Gastrodia elata20.760
SRR5643528five period of Gastrodia elata15.640
SRR5643658five period of Gastrodia elata20.530
SRR5643659five period of Gastrodia elata13.620
SRR5643660five period of Gastrodia elata15.490
SRR5643661five period of Gastrodia elata12.460
SRR5643662five period of Gastrodia elata12.250
SRR5643663five period of Gastrodia elata14.300
SRR5643664five period of Gastrodia elata15.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.780
SRR6049655Rhizomagastrodiae_C368-T10_good_111.830
SRR6049656Rhizomagastrodiae_C368-T07_good_115.320
SRR6049657Rhizomagastrodiae_C368-T07_good_126.340
SRR6049658Rhizomagastrodiae_C368-T04_good_128.100
SRR6049659Rhizomagastrodiae_C368-T04_good_132.150
SRR6049660Rhizomagastrodiae_C368-T01_good_122.530
SRR6049661Rhizomagastrodiae_C368-T04_good_124.530
SRR6049662Rhizomagastrodiae_C368-T01_good_114.780
SRR6049663Rhizomagastrodiae_C368-T01_good_117.220
SRR6049664Rhizomagastrodiae_C368-T10_good_110.790
SRR6049665Rhizomagastrodiae_C368-T10_good_110.790
SRP279888GastroGastrodia elata tuber 21.08
JuvenJuvenile tuber23.46
Mother_GastroMother tuber of Gastrodia elata 20.43
Mother_JuvenMother tuber of Juvenile 24.57