Gene detail

Detail information of GWHGAAEX002192/evm.TU.scaffold_118.40

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|20094914\|ref\|NP_614761.1\|	7.00E-20	DNA-directed RNA polymerase subunit N [Methanopyrus kandleri AV19]
KOG	KOG3497	2.00E-40	DNA-directed RNA polymerase, subunit RPB10
nr	gi\|590694753\|ref\|XP_007044696.1\|	3.13E-41	RNA polymerases N / 8 kDa subunit [Theobroma cacao]
Swissprot	tr\|Q9SYA6\|RPBAL_ARATH	7.00E-41	DNA-directed RNA polymerase subunit 10-like protein
trEMBL	tr\|A0A061E7B4\|A0A061E7B4_THECC	1.00E-41	RNA polymerases N / 8 kDa subunit {ECO:0000313\|EMBL:EOY00528.1}
TAIR	AT1G61700	2.00E-40	RNA polymerases N / 8 kDa subunit

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000126	2868017	2880572	-

Transcript Sequence
>GWHTAAEX002192 ATGGTTCACCATGCAGTGAATGTTCTTGTTTCTACTGAGGTTAAGGAGTATACATCTTGGAAGTTTCACAAAACAGCGAAAATGATCATTCCTGTTCGCTGCTTCACATGTGGAAAGGTAATCGGCAATAAATGGGATACATATCTTGATCTTCTTCAGGCGGATTACTCTGAGGGGGATGCTTTAGATGCTCTTGGATTGGTTCGTTATTGCTGCAGGAGAATGCTTATGACTCACGTTGATCTGATCGAGAAGCTTCTCAATTATAACAAATCACTAGATCTGTTCTTATCGTCCAGCATCCATGAAGTAAAGATAAAACCTTAAATAGAAGATATAACCCAGAAGAAGAAGGGAGCAGGTTCAAACAACAACTGAAACACTCGGCAGCAATGAGGAAATCTATACAAATCCACATAAAGGCAGACCCCACCTAGCCAAGAGCAGAAAAAAAGTTAAAGAGCCAGTCACATCTACACCATTCCACAGGCACAACATGCAAAACTATTAGGATATTATATGGCCAACAAGCCTCAGAATACCACCAAACATTCATCAGTAAGGGAATCATTATAACTGCATACATCAAAGGTCTACTAAGACAGTCAAAATAAAGCAAAGCATGCCAAAACATCCTCTACAGAACATAATTGATGGTTCCCAGAAGGGCTCCCTGAAATTTAATGGACTGCAGCATGAAATTCAGATGATGTTAGGTAGGGCTAACCAATTTCCCATCACAGCATCCAAAATAAGAGTTGGGCCAATGTGTGAAGGAAAAACAACATAGAGCTGCAGTCCGAACCACATGCAGATAAGATAATTGGGTTTTACTATCCAAGTCTCCAACTTATTATGAATTTAACGTCTTTCACTGAGTTCATGTTATCATTAGAGAAGGACAACTTGCTTATAGTAATTTGGATAGCGTGTTTAATAGAAATACAAGTAGTAGAGGTGTATGCACTATTATAGGAATACCTTGTTTTTTTTCTACCCAGTAATGCGCGAAGGCACTAGTAATAAATAGGACTAGCCTTTTGGTTTACCTTACTCCAGAGTCACAATATTCATATAATAGATCAAGCGAATGGGGATTAAAAATTATGGGTGAGCCTCAACCTGTTTAGCAAAGAGTAACTTCTTACAATTAGTACCCCAAATATTCAAGATGTCGGTCGTTTGAGACATTTATGAAAGGCCTTTCAAATTGTGCAAGCAAATTTCAGATTGTGCTATTTAAGAAAAATCCATGTGCCAATGAGTTGAATTGAAAATGCTCTTAAGTGACTGATAATTAAAGCATTTGTAGTGCACAACTGTACGAGTCCATGGATATATTCTGAGATTTTCACCGTGCTTCTAAAAATGATGTGCACAAGATTTGCAAACATAGGACATTTTGCCTTCAAGCAAAAGTTATTAATAAAAGGCAGGTTTAAATCTCATTTTTCTTTGGGTGCAGTGGGGCATCGTTACTCAAAATAACACAAAGTCTTGTTGATTTTGGTTTGTTGAATTTTAGATGCAAGTTATTCTTGTAATTCTTAAAATGTTGGGGTTTGATTTGTCATTTTGAATGCTAAGTAAAATTTTTAGCGATTACTTGGAATAATACTACTCCCAATTTGGATGAATTTTTTAACTCCTGCTTATCTATGTCTGAAAACATAGGAAGCTGCCTCCCCGTGCGATAACCGATGATTATATTGCCGACCCCCACTGATCTAGTTGTTGAGGTCCCCCACTTCCATCCTTTGTGGGCTCCGCCCGCCTTAATAGGCTCCATTGAATAGTTGATTCCATCCATTTACCTCCATGTCATGCACGTGTTGAATTGTGTTTTTATTAGTAAAAAATATGAACCTGCACACTAAATTTTAAATCAACCAAGCGCCAAAAAAATGATCACACTTCATTTACTTTACATAAATTTATTTTACTTTTAACATTTTTTTCCTCAAACCAGATAGCTTTAAACATGCAATGATTGCTAACTTTTTTATAATCCCCGTAAGCACATAAATTTCTCTAAATCAGTATGTGATAAAGTTCAAGATAAAATATTTAGAAACTGAAGTTTCCCACAAAATAATTGACTTATTGCTGTCTACTCGTCCATTTAATAATTTTATTTTGTAGAATTGAGCTCAAAGAGGCATTAGTTCTAGAGATAGGATGACCAAGATGCTGAAATGGAAACGAGCCTAACTAAAATGGATATCAGAAGCAAGAGTGATTTTGTTCTGCACAACCTTAGAGAATGGTTTTGAATATCTCCAAGTTGCACATGAGGCGACTCATGACATAAAATTTCCTTGTAGAACTTTGAGTAAGTAATGCTATTCATAGATGCAACTCCTAAAAATTAATACATCATCAACAATCAGTAAATGAGATCATTTACAAGAAACATTAGAGGGAGTTATTAGAAGCCTTAAATAAGCAAGTGAGGCCATTCGTCACTAAAATAAATATGAAAGGGAAAAGGGATAACTTTGCCTGAGACCATTAGATCAATTAAATTCATATATTAAGCCATTAAGGTTAAATGAGAAGTGCCATCATTAATTAAAGCACTTGTCTGATTTATTATCAAATAGGAAATCTTTAGCCACTAATCTTCTACCAATGAAAGATCTGTCCACACTATTAAAAAATTTAGATTAAAAATTTGCCCCCAAAACATACAAAGAATTTCATTAGCAAGAATCACATTACTAGGAATGTTCTTTTAGAAATAAATGTTGTTTGAGCTTAAGTAAATTACATATGGAAGCACCACCTTAAGTTTCGAGCAATGATTTTTGCAATGGCGTTAAAGTTAGTATTGCACGAAGAAATTGGTCTGAAATCCCTAATTTTTTCATGAAGAAAGGAAATCACTAAAAATTGAATTCCATTAATAATGACTGACAATTCATTCATTGATTTAAATATTTGAATAAGCTTTTCTTAAAGATGGAGCTTTTTTGAATCACTGTTAGAAGCATAAATGAAATAAATTCAAAATTGCCAAATCCCAAGCTTAAGAAATTTGATGATGGACGAGATAATTGAGATCAGTCTTATCCCACTAGACATTCTCCCAGCCATCAAATTGGAAAAGTTATTACATGGGTTCTCATTACTGAAAAATTGGAATCTCTTATCAAGGATATGGCTTTCAAAAACATCAACATTAATTCTGGTCTCTTGTAAAGCCACTATTTAGAAGAAAAAAATTGATTTTACTAGCTTAATCTGAATACCAGAATGAATACCTCTAGTATTCCATGCCACAAAACAAGACCAAGATATTGAAATTATAGAAAAGATGAGTGGAAACAAAGACACATGCTAGCTAAGCAAGGTTAAATTACCCAAAATATAATCAACTTTCTCCATGGAGGAGACGATGAAAGAAATTCTACCAATCAATCACTATGCGGAGCCCACACCTGCCCCCTTAAAGGAATTCTTAGATCCTCCATCAAGAGGGATCTTAGTGAATTGGCGGCCCAAAAAGCTATTTTATGTCCCAGATAATTCCTTGAATCCCCATCCTCGCTACCACTAGGGTTTGAGTTAACATTAAAAGATTTTGGAGGAGTGAAATTAGCCTCAGACAATATTCGTAGAAGACGAACCCACCCGGATGATCAGACATGACACAACACATTGGTAGAGTCAACAGGACGCTGGAGTGGTCATAATTTATAGAGAAGATCTAGGATGCGGGGTGTGAACCTGGAGAATTGCTTCTTTCTTCAATTCCTATACTCAATAATCATAGAAGAGGAGAGTCATGACCCAAAACATTTGCAGAATCAATGGATTTAATAATTGGAGCCTCTGGAGCAGTGACAATTTATAGAGAAGATCTAGATGGTGGGCTGTGACCTTGAAGGATTGCTTCTTTCTACGACTCCTACCTTATTTAGGGGCTTTAGACATTGAATGCTATTGGGTCCCTTTGACAATATTCGAACTAGTATCCGAGGTGTTGCATGATTTGCAGGCCACAAGAATCCAATCATAAACCATTGTGTAAAATAGTTTTCAGTAGTAATATTATGGTTGAGACAAGTTGGAAGGGAAGAGGAAGTAGGTATACCTCAACACAGTCCTCTTAGCAAATGAAAGCCTAGAGCGATTATCTGTGAGATAATTGGCCATAATGTACAAAGCTATATTTGAGACCAACATATGTTCACAAAGAGCTTGAGCTGAGAAGGGATCTTTGATCCTTCTGAAAATATTCGTCTAGGAGAAAGAGCCAACTAGAGTGGATGAGAAGATCTACTAAGATTAGGTGAGAAAGAGGGAAACAGAAATGAAGAACCCTGCCGCTCTCCAATGATCTCAAAATGCTATGGTACGCTATTCGGTATCTCAATATTTATTTTTAGGCAAATAAATATTTTTAATACAGCTATAGTTATAATTTTGATTAATGAATCTTATTTATTAT

Network for GWHGAAEX002192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01194.16	RNA_pol_N	28	86	4.70E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03007	RPB10, POLR2L	RNA polymerase	map03020
K03007	RPB10, POLR2L	Cytosolic DNA-sensing pathway	map04623

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.100
SRP064423	SRR2545915	Juvenile tuber	2.130
SRP108465	SRR5643513	five period of Gastrodia elata	1.560
	SRR5643514	five period of Gastrodia elata	1.080
	SRR5643515	five period of Gastrodia elata	1.740
	SRR5643524	five period of Gastrodia elata	1.310
	SRR5643525	five period of Gastrodia elata	1.130
	SRR5643528	five period of Gastrodia elata	1.430
	SRR5643658	five period of Gastrodia elata	0.980
	SRR5643659	five period of Gastrodia elata	1.860
	SRR5643660	five period of Gastrodia elata	2.420
	SRR5643661	five period of Gastrodia elata	2.120
	SRR5643662	five period of Gastrodia elata	2.390
	SRR5643663	five period of Gastrodia elata	2.250
	SRR5643664	five period of Gastrodia elata	1.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.230
SRP279888	Gastro	Gastrodia elata tuber	2.82
	Juven	Juvenile tuber	1.52
	Mother_Gastro	Mother tuber of Gastrodia elata	1.58
	Mother_Juven	Mother tuber of Juvenile	1.86