Detail information of GWHGAAEX002194/evm.TU.scaffold_118.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428316794|ref|YP_007114676.1| | 4.00E-19 | (Myosin heavy-chain) kinase [Oscillatoria nigro-viridis PCC 7112] |
| KOG | KOG0321 | 5.00E-156 | WD40 repeat-containing protein L2DTL |
| nr | gi|672131652|ref|XP_008789388.1| | 0 | PREDICTED: denticleless protein homolog [Phoenix dactylifera] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 7.00E-13 | Protein Mut11 |
| trEMBL | tr|M0SLR2|M0SLR2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P06950_001} |
| TAIR | AT3G27640 | 5.00E-156 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000126 | 2995306 | 3007800 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002194
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 102 | 135 | 0.0011 |
| PF00400.31 | WD40 | 140 | 178 | 4.50E-05 |
| PF00400.31 | WD40 | 313 | 346 | 0.009 |
| PF00400.31 | WD40 | 357 | 391 | 0.00096 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.320 |
| SRR2545915 | Juvenile tuber | 4.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.080 |
| SRR5643514 | five period of Gastrodia elata | 5.020 | |
| SRR5643515 | five period of Gastrodia elata | 2.730 | |
| SRR5643524 | five period of Gastrodia elata | 4.090 | |
| SRR5643525 | five period of Gastrodia elata | 0.370 | |
| SRR5643528 | five period of Gastrodia elata | 0.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.470 | |
| SRR5643659 | five period of Gastrodia elata | 2.910 | |
| SRR5643660 | five period of Gastrodia elata | 2.510 | |
| SRR5643661 | five period of Gastrodia elata | 2.910 | |
| SRR5643662 | five period of Gastrodia elata | 1.670 | |
| SRR5643663 | five period of Gastrodia elata | 3.650 | |
| SRR5643664 | five period of Gastrodia elata | 1.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.17 |
| Juven | Juvenile tuber | 2.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.25 | |
| Mother_Juven | Mother tuber of Juvenile | 0.82 |