Detail information of GWHGAAEX002195/evm.TU.scaffold_118.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|375012581|ref|YP_004989569.1| | 2.00E-65 | tRNA pseudouridine 55 synthase [Owenweeksia hongkongensis DSM 17368] |
| KOG | KOG2529 | 0 | Pseudouridine synthase |
| nr | gi|643740807|gb|KDP46397.1| | 0 | hypothetical protein JCGZ_10237 [Jatropha curcas] |
| Swissprot | tr|Q9LD90|CBF5_ARATH | 4.00E-21 | H/ACA ribonucleoprotein complex subunit 4 |
| trEMBL | tr|A0A067LDC0|A0A067LDC0_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP46397.1} |
| TAIR | AT5G14460 | 0 | Pseudouridine synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000126 | 3091819 | 3143524 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002195
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01509.17 | TruB_N | 303 | 453 | 5.50E-52 |
| PF16198.4 | TruB_C_2 | 454 | 497 | 1.30E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0001522 | Biological Process | pseudouridine synthesis |
| GO:0009451 | Biological Process | RNA modification |
| GO:0006396 | Biological Process | RNA processing |
| GO:0009982 | Molecular Function | pseudouridine synthase activity |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.940 |
| SRR2545915 | Juvenile tuber | 20.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.960 |
| SRR5643514 | five period of Gastrodia elata | 13.200 | |
| SRR5643515 | five period of Gastrodia elata | 12.710 | |
| SRR5643524 | five period of Gastrodia elata | 11.620 | |
| SRR5643525 | five period of Gastrodia elata | 16.210 | |
| SRR5643528 | five period of Gastrodia elata | 14.040 | |
| SRR5643658 | five period of Gastrodia elata | 11.150 | |
| SRR5643659 | five period of Gastrodia elata | 19.810 | |
| SRR5643660 | five period of Gastrodia elata | 20.740 | |
| SRR5643661 | five period of Gastrodia elata | 20.880 | |
| SRR5643662 | five period of Gastrodia elata | 20.240 | |
| SRR5643663 | five period of Gastrodia elata | 20.040 | |
| SRR5643664 | five period of Gastrodia elata | 21.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.00 |
| Juven | Juvenile tuber | 30.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.83 | |
| Mother_Juven | Mother tuber of Juvenile | 22.17 |