Detail information of GWHGAAEX002196/evm.TU.scaffold_118.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-177 | FOG: PPR repeat |
| nr | gi|743814000|ref|XP_010929894.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q9STK5|PP269_ARATH | 1.00E-177 | Pentatricopeptide repeat-containing protein At3g48250, chloroplastic (Precursor) |
| trEMBL | tr|F6GTR7|F6GTR7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB42933.1} |
| trEMBL | tr|F6GTR7|F6GTR7_VITVI | 9.00E-19 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB42933.1} |
| TAIR | AT3G48250 | 4.00E-177 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000126 | 3172400 | 3174800 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002196
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 98 | 145 | 9.40E-08 |
| PF17177.3 | PPR_long | 359 | 447 | 2.30E-10 |
| PF01535.19 | PPR | 485 | 511 | 0.0085 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.960 |
| SRR2545915 | Juvenile tuber | 12.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.620 |
| SRR5643514 | five period of Gastrodia elata | 13.990 | |
| SRR5643515 | five period of Gastrodia elata | 10.820 | |
| SRR5643524 | five period of Gastrodia elata | 12.210 | |
| SRR5643525 | five period of Gastrodia elata | 5.610 | |
| SRR5643528 | five period of Gastrodia elata | 4.960 | |
| SRR5643658 | five period of Gastrodia elata | 3.240 | |
| SRR5643659 | five period of Gastrodia elata | 16.140 | |
| SRR5643660 | five period of Gastrodia elata | 17.600 | |
| SRR5643661 | five period of Gastrodia elata | 18.350 | |
| SRR5643662 | five period of Gastrodia elata | 16.500 | |
| SRR5643663 | five period of Gastrodia elata | 16.590 | |
| SRR5643664 | five period of Gastrodia elata | 10.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.64 |
| Juven | Juvenile tuber | 17.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.27 | |
| Mother_Juven | Mother tuber of Juvenile | 8.71 |