Detail information of GWHGAAEX002201/evm.TU.scaffold_119.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|261417404|ref|YP_003251087.1| | 3.00E-31 | CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] |
| KOG | KOG1018 | 3.00E-71 | Cytosine deaminase FCY1 and related enzymes |
| nr | gi|672165317|ref|XP_008802558.1| | 4.97E-92 | PREDICTED: tRNA-specific adenosine deaminase 2 [Phoenix dactylifera] |
| Swissprot | tr|Q9S7I0|TADA_ARATH | 7.00E-16 | tRNA(adenine(34)) deaminase, chloroplastic (Precursor) |
| trEMBL | tr|B6T9V4|B6T9V4_MAIZE | 5.00E-90 | tRNA-specific adenosine deaminase {ECO:0000313|EMBL:ACG33887.1} |
| TAIR | AT1G48170 | 3.00E-71 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000124 | 412611 | 446147 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002201
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00383.22 | dCMP_cyt_deam_1 | 10 | 113 | 2.10E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016787 | Molecular Function | hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.990 |
| SRR2545915 | Juvenile tuber | 47.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.080 |
| SRR5643514 | five period of Gastrodia elata | 23.810 | |
| SRR5643515 | five period of Gastrodia elata | 23.550 | |
| SRR5643524 | five period of Gastrodia elata | 18.720 | |
| SRR5643525 | five period of Gastrodia elata | 28.430 | |
| SRR5643528 | five period of Gastrodia elata | 23.160 | |
| SRR5643658 | five period of Gastrodia elata | 28.540 | |
| SRR5643659 | five period of Gastrodia elata | 51.910 | |
| SRR5643660 | five period of Gastrodia elata | 47.880 | |
| SRR5643661 | five period of Gastrodia elata | 50.060 | |
| SRR5643662 | five period of Gastrodia elata | 44.460 | |
| SRR5643663 | five period of Gastrodia elata | 42.250 | |
| SRR5643664 | five period of Gastrodia elata | 46.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 49.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 57.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 64.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 52.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 53.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.71 |
| Juven | Juvenile tuber | 52.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.53 | |
| Mother_Juven | Mother tuber of Juvenile | 31.89 |