Gene detail

Detail information of GWHGAAEX002209/evm.TU.scaffold_119.17

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672136857\|ref\|XP_008792133.1\|	1.13E-118	PREDICTED: probable transcription factor GLK2 [Phoenix dactylifera]
Swissprot	tr\|Q94DH3\|PCL1_ORYSJ	1.00E-13	Transcription factor PCL1
trEMBL	tr\|V7AXN0\|V7AXN0_PHAVU	7.00E-109	Uncharacterized protein {ECO:0000313\|EMBL:ESW10324.1}
TAIR	AT2G03500	1.00E-85	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	652937	674692	+

Transcript Sequence
>GWHTAAEX002209 ATTAGTTATGCTGGCCCAGCGAATTGCCACAACAATTGACTGATATTTTGACAAAAGCTATTCCACATGCAACCTTTGTAAACATTGCTAACAAGCCTGTGGCTCCACAGCCATTAACTTGAGGGGGCATATTAAATGAAATGCTTGTAAAGGTTTTGTGGATTTAAGCACCAACTATCAAGTCAGACAACTTAAAACTTGGGTGGTTGCATAGCAATGGATTTCTCGGAAAAGCATCCGAAGCGCATGACTATGTCCTCCAGCTTGTCTCCCTTTTTATTTTTTTCAAAAATTGGCTTGATTCCCTTCATAAGAAAAACCCTAAGTCAGTCATTTTTGTTATTTAAATTTTCTTCTCTGCGAGAAGTTACCATCCATTTGCTTTTTATCACTACCTTTTTCTTTTCCTCTCTTCAAACATCACTTTATTCCCTCCCTCGAACTCACACTTAAAAGAAGCTTGCTAGTTTGATCCCTTCTTCTCTATATATCTCCTCTGTTTTCAACTCTAATCTAATTTATACTTGATTACTAATTACCCCATGTAAACCTCATCATTCATAAGAAAACTTGGCCATAATCAACTTCGTCATTGACTCTATTATTACTCTCATGGCATCTTCGTCTTCTTCAGAGCTAAGTTTGGATTACAAGCTAAGCAGCTTCTCCATGAGCCAAAATCAAAATCCATTCGCTGGCCAAATGCAGAAGCTTCAGGAGTTCCTCTCTCGCCTTGAAGAAGAGCGGCTCAAGATCGAAGCTTTCAAGCGCGAGCTCCCTCTCTGCATGCAGCTGCTCAATAACGCCATGGAGGCATACAGAAAACAATTGGAGACATGCCAAGCAAGCCAGGGATCTCGGCCGCCGGTGCTCGAAGAATTCATCCCTCTGAGAAATGAGAGCACCGAGGAATCAGAGAAGGCAAGCTGGCTGGTGTCGGCGCAGCTATGGAAGAAGCAAGAAACAGGGGATGTACCTATGACAGAAACAGAGGAGCGGTCGATAATGAACTTGAGCTCCAAGTTGGTGCTAGAAACGAGAGGCAAAATTAACGGAGGAGCATTTCAGCCGTTCTCAAAGGAAAGGGAGAAGAGGAAGGATATTTCAGAGCTCGGTTTGGCTCATGATTCCATGGACAGGTTGGAGGCAGGGGAGAAAGAGAGCTCTTGTAGCAATAAGGGTGGGCATGGAAGTGAAGAGAGGCAGGGCAAGGGAGGAGGGAGTTGTTGTGATTCCGGCGAAGCAGTGGCGCCGGCTGTTGCGGCTCAAAGGAAGGCCAGGAGATGTTGGTCACCGGAGTTGCACCGGCGATTTGTTAATGCGCTGCAGATACTTGGTGGTTCTCAAGTTGCCACCCCAAAGCAAATTAGGGAGCTCATGAAGGTTGATGGACTAACAAATGATGAGGTGAAAAGCCATCTGCAGAAATACAGGCTACACACAAGAAGGCCGATGCCGCCGCCGCAGCTGCCGGCAGCTGCGGTTGCGCCGCAGCTGGTAGTTCTGGGAGGAATATGGGTCCCACCGGAGTATGCCACGTCAGCAGCGGCGGCCGCAGCTGTATCAACTGGCTCGTCGCTGTACGGCGCGCACCCCTCGCAGGCACACTACTGCGCTCAGCCGCCGCCGTCTCTTTACCACCTCGCGTCTTTACTTCCTGGCGGCGGCGGCGGCGGCGGGCGAGCGTTGACATCGTATCAGGAACGCCAGGGATCACCGGAGTCAGAGGTTAGGAGCGGCGGCGAGCGATCGGAGAGCATGGACGAAGAAGAGGAGGAGGAGGAGGAGGTGGTCGTCGAATTGGTCAGCGGAGTAGCCGTGGAGGACGTTAGTTGAGTCTCAGTTAATGAGACAAGCATCTGATCAAAAAAATTTGAATTCTATCAGCATGTAATAAATCCATTTTGAAGTTGTTTTGTTAATAGGTTTTTCTTCAAGAAGGAAACAATATCTATTTAGTATGAAATGAAAAGTCATTTATGAAATGAATGTTTCGTCTGAACATTATATAATTACCTTCTAATAATT

Network for GWHGAAEX002209

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module14

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	223	274	4.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.280
SRP064423	SRR2545915	Juvenile tuber	1.700
SRP108465	SRR5643513	five period of Gastrodia elata	2.830
	SRR5643514	five period of Gastrodia elata	1.220
	SRR5643515	five period of Gastrodia elata	1.370
	SRR5643524	five period of Gastrodia elata	1.510
	SRR5643525	five period of Gastrodia elata	7.250
	SRR5643528	five period of Gastrodia elata	8.950
	SRR5643658	five period of Gastrodia elata	4.890
	SRR5643659	five period of Gastrodia elata	2.980
	SRR5643660	five period of Gastrodia elata	1.210
	SRR5643661	five period of Gastrodia elata	1.870
	SRR5643662	five period of Gastrodia elata	4.140
	SRR5643663	five period of Gastrodia elata	2.490
	SRR5643664	five period of Gastrodia elata	3.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.110
SRP279888	Gastro	Gastrodia elata tuber	6.54
	Juven	Juvenile tuber	0.80
	Mother_Gastro	Mother tuber of Gastrodia elata	6.68
	Mother_Juven	Mother tuber of Juvenile	0.60