Detail information of GWHGAAEX002210/evm.TU.scaffold_119.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 1.00E-27 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0087 | 4.00E-115 | GTPase Rab11/YPT3, small G protein superfamily |
| nr | gi|731354436|ref|XP_010688595.1| | 1.02E-119 | PREDICTED: ras-related protein RABA5a [Beta vulgaris subsp. vulgaris] |
| Swissprot | tr|Q9FGK5|RAA5A_ARATH | 1.00E-115 | Ras-related protein RABA5a |
| trEMBL | tr|A0A068U7G7|A0A068U7G7_COFCA | 2.00E-119 | Coffea canephora |
| TAIR | AT5G47520 | 4.00E-115 | RAB GTPase homolog A5A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000124 | 691907 | 723308 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002210
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 17 | 177 | 1.50E-61 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07904 | RAB11A | Endocytosis | map04144 |
| Pancreatic secretion | map04972 | ||
| Vasopressin-regulated water reabsorption | map04962 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005525 | Molecular Function | GTP binding |
| GO:0003924 | Molecular Function | GTPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.720 |
| SRR2545915 | Juvenile tuber | 14.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.700 |
| SRR5643514 | five period of Gastrodia elata | 20.310 | |
| SRR5643515 | five period of Gastrodia elata | 14.760 | |
| SRR5643524 | five period of Gastrodia elata | 17.530 | |
| SRR5643525 | five period of Gastrodia elata | 8.450 | |
| SRR5643528 | five period of Gastrodia elata | 6.760 | |
| SRR5643658 | five period of Gastrodia elata | 6.390 | |
| SRR5643659 | five period of Gastrodia elata | 12.930 | |
| SRR5643660 | five period of Gastrodia elata | 10.660 | |
| SRR5643661 | five period of Gastrodia elata | 10.510 | |
| SRR5643662 | five period of Gastrodia elata | 8.290 | |
| SRR5643663 | five period of Gastrodia elata | 11.700 | |
| SRR5643664 | five period of Gastrodia elata | 8.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.47 |
| Juven | Juvenile tuber | 12.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.45 | |
| Mother_Juven | Mother tuber of Juvenile | 5.74 |