Detail information of GWHGAAEX002214/evm.TU.scaffold_119.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|56697511|ref|YP_167879.1| | 9.00E-24 | oxidoreductase, 2OG-Fe(II) oxygenase family [Ruegeria pomeroyi DSS-3] |
| KOG | KOG0143 | 1.00E-92 | Iron/ascorbate family oxidoreductases |
| nr | gi|672168154|ref|XP_008804067.1| | 1.80E-121 | PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Phoenix dactylifera] |
| Swissprot | tr|O24648|G3OX_PEA | 6.00E-96 | Gibberellin 3-beta-dioxygenase 1 |
| trEMBL | tr|B2NI88|B2NI88_ALLFI | 1.00E-119 | Gibberellin 3-oxidase {ECO:0000313|EMBL:BAG32267.1} |
| TAIR | AT1G15550 | 1.00E-92 | gibberellin 3-oxidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000124 | 881897 | 883793 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002214
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 40 | 128 | 1.50E-12 |
| PF03171.19 | 2OG-FeII_Oxy | 184 | 286 | 6.20E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04124 | E1.14.11.15 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Diterpenoid biosynthesis | map00904 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.180 |
| SRR2545915 | Juvenile tuber | 1.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.720 |
| SRR5643514 | five period of Gastrodia elata | 19.970 | |
| SRR5643515 | five period of Gastrodia elata | 9.100 | |
| SRR5643524 | five period of Gastrodia elata | 18.990 | |
| SRR5643525 | five period of Gastrodia elata | 1.760 | |
| SRR5643528 | five period of Gastrodia elata | 0.410 | |
| SRR5643658 | five period of Gastrodia elata | 1.820 | |
| SRR5643659 | five period of Gastrodia elata | 10.370 | |
| SRR5643660 | five period of Gastrodia elata | 10.260 | |
| SRR5643661 | five period of Gastrodia elata | 13.040 | |
| SRR5643662 | five period of Gastrodia elata | 7.910 | |
| SRR5643663 | five period of Gastrodia elata | 9.170 | |
| SRR5643664 | five period of Gastrodia elata | 7.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 62.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 66.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 88.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 86.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 55.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 67.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.15 |
| Juven | Juvenile tuber | 84.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.34 | |
| Mother_Juven | Mother tuber of Juvenile | 10.34 |