Gene detail

Detail information of GWHGAAEX002215/evm.TU.scaffold_119.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521462574\|ref\|YP_008149444.1\|	2.00E-24	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|672168134\|ref\|XP_008804056.1\|	0	PREDICTED: pleiotropic drug resistance protein 6 [Phoenix dactylifera]
Swissprot	tr\|Q8GU87\|PDR6_ORYSJ	0	Pleiotropic drug resistance protein 6
trEMBL	tr\|C5XMS6\|C5XMS6_SORBI	0	Putative uncharacterized protein Sb03g004010 {ECO:0000313\|EMBL:EES00201.1}
trEMBL	tr\|C5XMS6\|C5XMS6_SORBI	9.00E-32	Putative uncharacterized protein Sb03g004010 {ECO:0000313\|EMBL:EES00201.1}
TAIR	AT2G26910	0	pleiotropic drug resistance 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	896493	964597	-

Transcript Sequence
>GWHTAAEX002215 CGCAAAAAAACAATAATCAGCAGCTAGCGATGGTCTCATTCTTCCACTCCTATTCCTCCTCAGTGTCCATCGCATCAGCTCAACATATGTCAAGAGGGAGGGAGCCAACGGAAGGAAGTTAATGCTTGCTGGTGGGCCGTTGGATTGGGAGTTCTCCTCATTACACTTGCAGCTGCATGTGCGCATTTATGAGCATCATCTCCGTATCCTACCGCCCCTCGTCCATATTAGAGCAAAAGTTAGGGTTAGCGTTAGGGTCAGATTAAAGCCTGTCTGCTACGAATGTGGAACCCCCCGGAGGCTGCGGCGTTCTCAGGATCGACCTCCCACCGAGAATACGCCGATGAGGAGGAAAAAAAGCTTCGCTGGGCGGCGATCGAGCGCCTCCCTAGTTTCTCGCGCATTCGCCGCGGAATAATCCGTCGCGAAGACGGCGAGTTCTCCGATGTCGATGTGTCGAACCTCACATCCCGCGAGCAGACTGCCCTAATCGACCGCCTCCTCGGTGATTCCGGCAATCATGAGCGCTTTTTCCAGCGGATCCGCCAGCGATTCGACGCAGTGAACCTTGAATTTCCTAAGATTGAGGTACGATATCAGGAGCTGAAAGTTGACACATATGCTTATACTGGAAGCCGAGCTTTGCCTACGATACCAAACTTTATTTGCAACATGACAGAGGCCTTCTTAAGGAAGTTAAAAATTTTCTCAGGCAGGAGAAAGAAATTATCTATTTTGGATAATGTCAGCGGGGTAGTGCAGCCTTCTAGATTAACATTGCTTTTGGGTCCTCCAAGTTCAGGAAAGACAACTTTACTTTTAGCTCTTGCTGGGCGACTTGGCTCTAATTTACGGATGTCTGGAAATATTACTTACAATGGGCACAATTTTAATGAGTTTGTTCCGCAAAGAACATCAGCTTATGTTAGCCAACAAGATTGGTATGCTTCTGAAATGACGGTCAGAGAAACTTTAGAATTTTCTGGTCGATGCCAAGGAGAGGGAATCAAATATGATATGCTCATGGAGCTCTCAAGAAGGGAGAAGAATGCAGGAATAAAACCTGATGAAGACCTTGATATTTTTATGAAGGCATTAATTTTGGATGGAAAGCAGAACAACCTTGTAGTTGAGTTTATACTCAAGGTTTTAGGTCTGGATGTTTGTGCTGATACGCTGGTTGGAGATGAGATGGTCAAAGGGATATCAGGGGGCCAGAAGAAGCGCCTTTCCACAGGTGAATTACTGGTCGGTCCAGCTAGAGTGTTATTAATGGATGAGATATCAACTGGGCTTGACAGTTCAACTACTTATCAAATCATTAAATATCTTAGATATTCAACCCAAGCTCTTGATGGAACGACAATCATCTCTTTACTGCAACCAGCTCCAGAAACATTTGAGCTATTTGATGATATCATACTCATTTCTAAGGGACAAATTGTTTATCAAGGTCCCCGTGATGGAGTATTAGACTTCTTTGCAGGCTTAGGATTTAAATGTCCTGAGCGGAAAAATGTGTCCGACTTTTTGCAAGAAGTTTTATCTATGAAAGATCAACAACAATATTGGTCCTCTTTTGACAGACCATACCAGTTTATACCTGTATCTGAATTTGTTGAAGATTTTAGATCCTCAAATTTCGGCAAGAGACTGAATGAAAAACTGAAAATGCCATTTAATAAAGAAAATAATCATCCTGCTGCTTTATCAACTTCTTGCTATGGAGCTAAAAGGTTTGAGCTTCTCAAGGCAAATTTTTACTGGCAGCTGTTATTGATGAAACGAAATTCTTTTGTCTATGTCTTCAAGTTTATTCAGCTTCTTTTTGTTGCTCTTATTACAATGACTGTGTTTTTTCGGACAAAAATGTATCACAATAATGTTGACGATGGGATTCTCTATCTTGCGGCAATATATTTTTCCACGATTATTGTTCTCTTCAATGGGTTCACAGAAGTTGCTTTGCTGATTGCAAAACTTCCGGTTCTTTACAAGCACAGAGATTTGCATTTTTATCCTCCATGGACATATGTGCTTCCTTCATGGATCCTTAGTATTCCAACTTCTTTGATGGAGTCTGCCATGTGGGTGGCTGTTACATACTATGTGATTGGTTATGATCCCCGTATTACTAGATTTTTCGGTCAGTTCCTGTTACTGTTCTTATTGCATCAGTTGTCTTTGGCTCTCTTTCGTGTGATAGCAGCCGTGGGCCAAAATATGATAGTTTCTAACACTTTTGGATCGTTTGCTATGCTGCTTGTTATGGTTCTTGGTGGATTTATCATTTCTAAAGATAGCATTCCAAGCTGGTGGATTTGGGGGTATTGGATTTCACCGTTGATGTATGTTCAAAATGCTGCTGCTGTAAATGAATTTCTAGGGCATTCATGGGATAAGATAGTGGAAAACAACACTGTATCATTAGGGAAGACAATATTAAAAGATGCTGACTCGTTTACTGAAAGCTTTTCGTTCTGGATCAGTGTTTGTGCCTTGGTTGGCTATACAGTCATTTTGAACATATTATTCTCTTTGTTCTTGACCTACCTCAATTCTCTTGGTTTGCGGCAAGTTGTGTCGGCAGTTGAATTTCTAGACAGAAATGCTGGGACTTTGATTGCTGAGCGACTATCGGATTCTTTTGCAGAAGTTGGTGCCAAGGAGCAGAAAGGAATGGTGTTGCCCTTTCAGACTCTTACAATGTGCTTTAGGAATATAAATTATTTTGTAGACATACCTGTGGCACTTAAACAAAAAGGCTTTTTGGAGGATAGATTGCAGTTGCTTGTTAATATAACTGGAGCATTCAGGCCAGGAGTACTTACGGCACTTGTTGGAGAAAGTGGTGCTGGCAAAACAACCCTTATGGACGTTTTAGCTGGTAGGACAACAGGTGGACTCGCAGAAGGAGATATAACTATCTCTGGATATCTTAAAAACCAGAAAACATTTGCAAGAGTATCTGGTTATTGTGAACAGAACGATGTTCATTCTCCTTGCATGACTATTGTGGAGTCACTTTTATTCTCAGCCTGGCTCCGGTTAGCTTCACATGTTGACCAAAAGACTCTGAAACTCTTTGTAGAAGAAGTCATGGAATTGGTGGAGCTTACGTCATTAAGGTTTGCACTTGTTGGTTTGCCTGGGATTAATGGTTTGTCAATAGAACAACGCAAGCGATTAACAATTGCAGTGGAACTCGTTGCAAACCCTTCAATTGTCTTCATGGATGAACCAACATCAGGACTTGATGCCAGAGCTGCTGCCATTGTGATGAGAACAGTTCGAAATATTGTAAATACAGGGCGAACAATAGTGTGCACAATTCACCAGCCTAGCATTGATATTTTTGAGTCTTTTGATGAGGTTTCCATTCTTCATTTAGTTCATTGTAGATGGTTAATTGCAATTCTCAACTTTTTTCTTATCATTATTATATTTGTCATTTCAAATTTACCTTTTTGCACCATCACAGGCATAGTCTATGTTCTTCGCTTCTGTTTATGTATTCCATCGTTGCACAAAAAGACACCCTTCTCACATCTTTGTTGGTTAACTTCAACTGCACTGCATATATAATGTTTACGAATCTTTAAGTATGTGATGAAGGATTCTTACTATCCTGGAGTCATTATTTGAGCTCTCAGTGTCTTTATTTCACAGCTTTTGTTCATGAAACGTGGAG

Network for GWHGAAEX002215

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	66	127	6.30E-08
PF00005.26	ABC_tran	152	334	3.00E-16
PF01061.23	ABC2_membrane	489	700	1.20E-41
PF08370.10	PDR_assoc	705	766	2.80E-19
PF00005.26	ABC_tran	839	989	3.80E-18

Protein Sequence

>GWHPAAEX002215
MWNPPEAAAFSGSTSHREYADEEEKKLRWAAIERLPSFSRIRRGIIRREDGEFSDVDVSNLTSREQTALIDRLLGDSGNHERFFQRIRQRFDAVNLEFPKIEVRYQELKVDTYAYTGSRALPTIPNFICNMTEAFLRKLKIFSGRRKKLSILDNVSGVVQPSRLTLLLGPPSSGKTTLLLALAGRLGSNLRMSGNITYNGHNFNEFVPQRTSAYVSQQDWYASEMTVRETLEFSGRCQGEGIKYDMLMELSRREKNAGIKPDEDLDIFMKALILDGKQNNLVVEFILKVLGLDVCADTLVGDEMVKGISGGQKKRLSTGELLVGPARVLLMDEISTGLDSSTTYQIIKYLRYSTQALDGTTIISLLQPAPETFELFDDIILISKGQIVYQGPRDGVLDFFAGLGFKCPERKNVSDFLQEVLSMKDQQQYWSSFDRPYQFIPVSEFVEDFRSSNFGKRLNEKLKMPFNKENNHPAALSTSCYGAKRFELLKANFYWQLLLMKRNSFVYVFKFIQLLFVALITMTVFFRTKMYHNNVDDGILYLAAIYFSTIIVLFNGFTEVALLIAKLPVLYKHRDLHFYPPWTYVLPSWILSIPTSLMESAMWVAVTYYVIGYDPRITRFFGQFLLLFLLHQLSLALFRVIAAVGQNMIVSNTFGSFAMLLVMVLGGFIISKDSIPSWWIWGYWISPLMYVQNAAAVNEFLGHSWDKIVENNTVSLGKTILKDADSFTESFSFWISVCALVGYTVILNILFSLFLTYLNSLGLRQVVSAVEFLDRNAGTLIAERLSDSFAEVGAKEQKGMVLPFQTLTMCFRNINYFVDIPVALKQKGFLEDRLQLLVNITGAFRPGVLTALVGESGAGKTTLMDVLAGRTTGGLAEGDITISGYLKNQKTFARVSGYCEQNDVHSPCMTIVESLLFSAWLRLASHVDQKTLKLFVEEVMELVELTSLRFALVGLPGINGLSIEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEVSILHLVHCRWLIAILNFFLIIIIFVISNLPFCTITGIVYVLRFCLCIPSLHKKTPFSHLCWLTSTALHI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.570
SRP064423	SRR2545915	Juvenile tuber	3.480
SRP108465	SRR5643513	five period of Gastrodia elata	16.110
	SRR5643514	five period of Gastrodia elata	14.950
	SRR5643515	five period of Gastrodia elata	12.200
	SRR5643524	five period of Gastrodia elata	14.720
	SRR5643525	five period of Gastrodia elata	18.120
	SRR5643528	five period of Gastrodia elata	15.070
	SRR5643658	five period of Gastrodia elata	20.340
	SRR5643659	five period of Gastrodia elata	16.170
	SRR5643660	five period of Gastrodia elata	16.360
	SRR5643661	five period of Gastrodia elata	14.290
	SRR5643662	five period of Gastrodia elata	12.570
	SRR5643663	five period of Gastrodia elata	14.550
	SRR5643664	five period of Gastrodia elata	15.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.800
SRP279888	Gastro	Gastrodia elata tuber	4.89
	Juven	Juvenile tuber	19.14
	Mother_Gastro	Mother tuber of Gastrodia elata	5.17
	Mother_Juven	Mother tuber of Juvenile	19.91