Gene detail

Detail information of GWHGAAEX002216/evm.TU.scaffold_119.25

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743868526\|ref\|XP_010905595.1\|	PREDICTED: uncharacterized protein LOC105032750 isoform X2 [Elaeis guineensis]
trEMBL	tr\|Q9AYI6\|Q9AYI6_ORYSJ	Putative maize transposon MuDR mudrA-like protein {ECO:0000313\|EMBL:AAK00423.2}
TAIR	AT3G05850	transposable element gene

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	1013558	1034895	-

Transcript Sequence
>GWHTAAEX002216 CATAATTAGTAACCTTAAGCTTCTTTCCCTAAACAACCGGCCCTAAAAATTGCATCTCATTCGACCACACAACTCGTAGAGAGCTGCGATTATTCTCCTCCTTTCTGTGACAACCATCCGCGCCGATCTTTCTTCAACTCGCCTTCTCCTTCCTTTGAGATCTGACCGACCCTTCATCTTCTCCTTCTTCCTCTTGTTAGCAATGTCGATCACCTCATGAGATGTCGTTATGAGCCCTCGCCGAACCTCCTCGCTGAAGAACCGATTGCAGGCCAAACCCGATCTGGCTGATCCTTCGTTTGAAGGACTCCCCAAATTGGAAACCCATTTGTACACCATGGAAAGTTGAAGGCTTAAAGTTCTTTAATTGGTTGTTGCAGAAGTTTGGAGTGTAAGCTTTTCAGGAATGCAGTAGAGGCAGCCCAAGCAGCAGTAGGTCAGCAGCAAGTAATAATTGATGAGCCTGTAACTCTATTCTTAGGGTTAAGCTGGAATTCGTAATTGGCCTATGGATAGCAGGAAGATTGTGGCTATTTGCATGCACGGAGGAGAATTCAATAACAACAGTGATGGTACTCTGTCCTACTCTGGTGGAGAAGCACATGCAATTAGTGTTAGTAAGGCCATGTCATTGAATGATTTCAAGTCAGAAATAACTAATAGGTTTGATATAAACATCAGTGATACGTCGATCAAGTATTTTCTCCCTGGGAACAAACGAACTCTCATCACTATATCCAGCGACAAAGATTTGCATGGAATGGTTGAATTTAATGGGAAGGCTGCAATGACAGAGGTTTACCTTTTAGAAAAGCTTGATAACAGGAGCACCAGAAATGCAGATGCAGATTCAGGCACCTCTATGGATGCTTTTACTCATGAGAAAAAACGACAAAAGCAACAAGGTGGTGACAGGATAACAAGAACCAAGGGAAAAGTGTATAAGTCAGGCAACCCAATTACTGTCGCCACCAATGTCATTGTACAAGACACCATAAACACTGGTCAAAATGGATTGACAATTTTAGAAAATGTCAGCGATGAATCGAAAAGAGCTTTTGATCAAAGGGAAATAGTGAGCTTGCTCTTTGATTCAAACACCCCTCCACCCACTTATTTATCAACACCGATGAATGTCAGACCGTTAATTTCAAACACTCTCTGGGACGATCTGATCACCGGCGTTGGGCAGGAGTTTGACAATGCATCCGATTTTCGCGACCAGCTGTGTAAATATGCTATTAGTAAGGGTTTTATTTACAAATTCACCAAAAATGTTAGTGATAAAGTGACCGCAGTTTGCATCAATAACAAGAGCTGCACCTGGAGGATACATGCCTCCATGCCTTCTCACAAGCAGAAACTCGTCATCAAGATTTTGAACGACGTCCATACATGCGGGGGAGGCAACGGAAAAGACGGCCAGCGTCGATCAACGAGGCAATGGCTGACAAGTATTATCAAAGAGAAATTGCAGTATTCGCCGCAGTGCAAGCCTAGAGACATTGCCCGAGAAATTTATGAAAATTACGGGGTGAGTCTGAGCTATCACCAAGTATGGAGGGGAAAAGAAGATGCTCAGAAAGAGCTTTACAGCAATCTGAAAGAGACCTTCAGCCTCCTGCCTTGGTACTGCGACAAGATACTGGAGACTAACCCAGGCAGCATGGCTGTGCTATACACCTCTGTCGATTCGAGATTCCGTCGTTTTTTCGTGTCCTACAAAGCCTTGCTTCACGGCTTCGAGCAAGGCTGCCGCCCCCTACTTTTCCTCGATAGAATCTCCTTGAAGTCCACTAACCAATGCAAGATACTCGTTGCGGCCGGCGTGGACGGAAATGATACCGACTTCCCCATCGCCTTTGCTGTGGTGGAGGATGAGACTTACGATAGTTGGCTCTGGTTCTTGGCCCAGCTGAGATACGCTTTGACCAGCCCTCGGCCTCTCACCATCATATCCAAATGGAAGAAGGGGTTGGACGAGGCCGTGCTGCAGGTGTTCCCGGACTGCTACCACGCCCATTGTTTGCGCCAACTCATGGAGGAACTGAAGGCAGAGCTGCAGAAAGGCCCTTGGTCGCAGCAGCAAAGGCACTCCATGGCCAGCGACTTTACTCGTGCCGCTCAGTCCCGCACAGTTGAAGAATTCAATTCGTTCATTGAGAGCATTAGGACGGTCTCGAGCGACATTGCGGGTTGGGTCAAGGAAAGCAAGCCTGAGAACTGGGCTGACACCTTTTTCAAGGGTGCGAGATACGACCACATGACCACCAATATCGCCGAATCCTTCATCGACTGGATACCGAGCAGGTGCGAGTCCTTTGTGGTGCAGATGGTTGATTCAATTCAAGCCAAGTTGATGGAGCTGATGCAGCTAAGGAGAGAGGCATCGAACTCCTGGACGGGCACCCTAACGCCGGCTATGGATTTAAGGCTCCACGAAGAGATGCCGAAGGCACGCAAGCTGAGCGTCCTCTGCTCCTCGGATACCGTCTTTGAGGTTCGCGGGAACGTGATATACGTCCTTAACATCAAAGACTGCTCCTGCTCCTGCCGGAGGTGGCAGATCTCCGGCCTACCTTGCCACCATGCCATTGCGGTCTTCAACCATCTCGACAGATCGGTGTACGACTACTGCTCGAATTACTTCAAGATTGATTCTTACCGCGCAACTTATGGCGAATCGATACTGCCTATACCTGAGATTTCGAGCATTGATTTCAGTTCTTCAAAGTTGTTTCTCCCTCCTCCGACGTGCCATCCTGCTGGCCAACCGCGGAGGAAACGGTTGAAACCGCGGAAGACGAACAGGCCGTGGCTGTGCAGCAGATGCAAAGTGCCCGGGCATAACAGGGCAACCTGTGAAGCCGTCTTGTAAGCAACCCCTTTTTTTCTTTTTGCGTGTCAGGCATCAGCTTTGAAGGTTTTTAGGATCTTAGAGTTTTGCAGGCAAAACGAGAATGTATGTTTTGTTTTATTTTGTAGGTGCTATGTTGTTGTGATTATTATTAGGAGGGGGAGTATGAAATAATTAATTCTACAAAACAATGGATTTTTTAGTCTGTTCAAAGTGGTGTAGATTTGGAATAAAAGAAACTAGAAGGAGTCTCAGCAAAACGGCTGCCCTAAATTGAATTCTGTATTTTCCATATATTATACAGTGATATAAA

Network for GWHGAAEX002216

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00564.23	PB1	23	87	5.10E-09
PF03108.14	DBD_Tnp_Mut	223	285	6.70E-14
PF10551.8	MULE	428	512	2.00E-15
PF04434.16	SWIM	675	702	3.00E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.430
SRP064423	SRR2545915	Juvenile tuber	19.840
SRP108465	SRR5643513	five period of Gastrodia elata	20.260
	SRR5643514	five period of Gastrodia elata	20.240
	SRR5643515	five period of Gastrodia elata	20.290
	SRR5643524	five period of Gastrodia elata	18.110
	SRR5643525	five period of Gastrodia elata	14.640
	SRR5643528	five period of Gastrodia elata	14.600
	SRR5643658	five period of Gastrodia elata	16.370
	SRR5643659	five period of Gastrodia elata	26.800
	SRR5643660	five period of Gastrodia elata	26.870
	SRR5643661	five period of Gastrodia elata	25.310
	SRR5643662	five period of Gastrodia elata	25.360
	SRR5643663	five period of Gastrodia elata	24.920
	SRR5643664	five period of Gastrodia elata	25.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.610
SRP279888	Gastro	Gastrodia elata tuber	26.67
	Juven	Juvenile tuber	32.83
	Mother_Gastro	Mother tuber of Gastrodia elata	24.08
	Mother_Juven	Mother tuber of Juvenile	23.23