Detail information of GWHGAAEX002228/evm.TU.scaffold_119.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|170781032|ref|YP_001709364.1| | 2.00E-78 | peptidase [Clavibacter michiganensis subsp. sepedonicus] |
| nr | gi|743769670|ref|XP_010915125.1| | 0 | PREDICTED: subtilisin-like protease SDD1 [Elaeis guineensis] |
| Swissprot | tr|O64495|SDD1_ARATH | 2.00E-149 | Subtilisin-like protease SDD1 {ECO:0000303|PubMed:10809670} (Precursor) |
| trEMBL | tr|A0A067JNI9|A0A067JNI9_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP25551.1} |
| TAIR | AT1G04110 | 6.00E-149 | Subtilase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000124 | 1208023 | 1217666 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002228
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05922.15 | Inhibitor_I9 | 36 | 116 | 5.90E-11 |
| PF00082.21 | Peptidase_S8 | 138 | 573 | 2.50E-50 |
| PF02225.21 | PA | 367 | 444 | 1.80E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.270 |
| SRR2545915 | Juvenile tuber | 71.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.320 |
| SRR5643514 | five period of Gastrodia elata | 68.300 | |
| SRR5643515 | five period of Gastrodia elata | 72.390 | |
| SRR5643524 | five period of Gastrodia elata | 122.230 | |
| SRR5643525 | five period of Gastrodia elata | 6.110 | |
| SRR5643528 | five period of Gastrodia elata | 5.690 | |
| SRR5643658 | five period of Gastrodia elata | 11.510 | |
| SRR5643659 | five period of Gastrodia elata | 7.490 | |
| SRR5643660 | five period of Gastrodia elata | 5.970 | |
| SRR5643661 | five period of Gastrodia elata | 4.800 | |
| SRR5643662 | five period of Gastrodia elata | 3.330 | |
| SRR5643663 | five period of Gastrodia elata | 3.180 | |
| SRR5643664 | five period of Gastrodia elata | 1.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 58.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 84.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 86.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 72.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 53.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 93.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 52.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 75.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 75.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.77 |
| Juven | Juvenile tuber | 2.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.69 | |
| Mother_Juven | Mother tuber of Juvenile | 1.79 |