Detail information of GWHGAAEX002230/evm.TU.scaffold_119.41


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-73FOG: Predicted E3 ubiquitin ligase
nrgi|567217644|ref|XP_006412451.1|2.72E-76hypothetical protein EUTSA_v10025242mg [Eutrema salsugineum]
Swissprottr|Q93Z92|RING4_ARATH3.00E-26E3 ubiquitin-protein ligase At4g11680
trEMBLtr|V4MBW9|V4MBW9_EUTSA1.00E-76Uncharacterized protein {ECO:0000313|EMBL:ESQ53904.1}
TAIRAT4G326002.00E-73RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012412238251236128+
Transcript Sequence

Network for GWHGAAEX002230

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_22763183.10E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.000
SRR2545915Juvenile tuber1.120
SRP108465SRR5643513five period of Gastrodia elata6.240
SRR5643514five period of Gastrodia elata9.830
SRR5643515five period of Gastrodia elata5.470
SRR5643524five period of Gastrodia elata7.090
SRR5643525five period of Gastrodia elata9.210
SRR5643528five period of Gastrodia elata6.490
SRR5643658five period of Gastrodia elata8.320
SRR5643659five period of Gastrodia elata3.850
SRR5643660five period of Gastrodia elata7.250
SRR5643661five period of Gastrodia elata2.770
SRR5643662five period of Gastrodia elata2.830
SRR5643663five period of Gastrodia elata3.420
SRR5643664five period of Gastrodia elata2.380
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.350
SRR6049655Rhizomagastrodiae_C368-T10_good_125.990
SRR6049656Rhizomagastrodiae_C368-T07_good_116.280
SRR6049657Rhizomagastrodiae_C368-T07_good_19.020
SRR6049658Rhizomagastrodiae_C368-T04_good_115.060
SRR6049659Rhizomagastrodiae_C368-T04_good_113.140
SRR6049660Rhizomagastrodiae_C368-T01_good_19.520
SRR6049661Rhizomagastrodiae_C368-T04_good_112.820
SRR6049662Rhizomagastrodiae_C368-T01_good_126.500
SRR6049663Rhizomagastrodiae_C368-T01_good_118.240
SRR6049664Rhizomagastrodiae_C368-T10_good_146.640
SRR6049665Rhizomagastrodiae_C368-T10_good_146.640
SRP279888GastroGastrodia elata tuber 5.49
JuvenJuvenile tuber0.65
Mother_GastroMother tuber of Gastrodia elata 5.03
Mother_JuvenMother tuber of Juvenile 1.12