Gene detail

Detail information of GWHGAAEX002234/evm.TU.scaffold_119.47

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743772336\|ref\|XP_010916475.1\|	3.69E-74	PREDICTED: uncharacterized protein LOC105041278 [Elaeis guineensis]
Swissprot	tr\|Q9FXD6\|ARR11_ARATH	8.00E-15	Two-component response regulator ARR11
trEMBL	tr\|M0RRX1\|M0RRX1_MUSAM	5.00E-70	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P13410_001}
TAIR	AT1G68670	9.00E-66	myb-like transcription factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	1302496	1310374	-

Transcript Sequence
>GWHTAAEX002234 CCACTTCAACTATTCTGAATCATTTCTATATTTATATATATATACAGAAAAACTAACTGCTTACTGAGCACAGATTAAAGGTGGGACTTTTCTTCGGATCTTATCCGGATGACTTCAGCGCCAGGATAGCAGCATCGCTCCGCCGAATATTCAAGAAATGGCCCCTCAAAAGATTCGTTTGCGTACGCGACGCCTCGACCCTGATTCGATACCCTTTCCCAGTTCTCTTGCTTCACCCCCACTCCTCTCCCCTCTTCTTTCTTGTATCGTTCACCGGCCTCCTCCCTTTCCGATCAGCGGCATTGGCCATGGCGGAATGGAAACTGAGGAAGCGCGACTTCATTTCCGCGCTCGAGGAAGAGCGCCGCAAGATCCAGATGTTCTCCCGCGAGCTCCCTCTGTGCTTGCAGCTCGTCAACGAAGCGATTGATGACTTGCAACAGCGAATGGTGAGCGACGAGATTTCCGGGGGCGAGAAACCGGCGATGGATGCAGGAGGGACTAATTGCAAGCTGGATTGGCTCAGATCTGCCCAGTTATGGAGTCCTGGAGTGGCTGACGAACTTCCGAACGAAGGGGGCACGTTGAGGAAACCTGTCGCTGTGAATGCGAGGAGGGTTGGGAGAGCCTTTCAGCCTTTTGAGAGGAGTAGATCGACTCCGTCTGTTGCGGATGCCTCGGCAACACCTGCGGTTAGCTCCACTTTCGGAGAAAGAAGAGATGGAGTTGAAGATATGGAGAAGAAGGAGGAGGTGGATCAATCTCCTGCTACTTCGCATTCTAATAAGAAACAGAGGAGGTGTTGGTCTCCTGATCTGCATCGGAAGTTCTTGAGTGCGCTGGAAGAGCTCGGAGGTTCCCACGCTGCAACTCCGAAGCAGATCAGGGACATGATGAAGGTGGATGGCCTCACTAACGATGAAGTAAAGTCTCATTTGCAGAAATATCGACTGCATATGAGGCGGCCTATGGCCATGGTTCAGAGTAGCAGCAGCAACAGCAATCAGAATCAACCGCAGTACATTTTGTTAGGAGGCATCTGGGCACCACCACATGAGTATTCAGCCTCAGCGGAAGCCATTGAAACACCTATCACACAGACAATTGAAGGTAGAATTGCTGCATCTCTCCAACTTGACTTAGGGTTGAAGGAAGAGAAAACAAATAAGAAGCAGCAAATGAATGAGCCTACTACCGTGCTGCTTCATTCACAGCAGAGGAACAGCCAAGATGATGACAGCCTCATGGACGATGCAGCCACCATATCCAATTCCTCCAGCACATCCTTCTCTTCACAGACCACATCAGTGTAGCATCCTTTTATGTAACCATTGGAGAAGAGTATGATCATCTGTAAAATTATATCTATTTTTATAACTTTGTTTATATTTTCATGTACCACCAAACTATGTTTATATTTTCATGCAATTTTTCTGTGCATGAATCATTTTTCACCTCAAAAAAAATGCAGTTAACTCTCTAACGCCAGTTTGCTTATCATCGTAAGCTTTTTGTCTCTTAAAATTTCAAATTTTAACGTGATGTTGGTTTCAGGTGCGAAATGTGATCAAGGATGGTTGACTCTTGTTCGATTTCATATGATGGGAACTATGTGACTTGCTCAGTACAACGTAAGCCATAGTATACCGGTGTGTTTCTAAAAATGAAAATATTTGCACAAATAGGCTCTTATTAGTTTCCAAAAGATTTTTCTAGGAACGAGGATAACGAACTCTCAGCAGCAAAGCTTCTATTTATCAGATTGTATTAGTATTAGTTGCACAGTTTTGATCTAAAATCACATTGGATAGATATAAAAATAGCATTTCAAGGAAGAGTTGAAAGAAACAATCTATATGAAGCAATCAAAAGGATTTGAGGCTGCTTATCATGAGGATTAAACGTGCACCCTGCTTAAATTCAAATTCATGTAGTTATTTATTTAGGTTGTGGATTAAAATAAACAGTTGCATGACGACTGACAAAATGAGAGCAAGTTCTTGATATTATTGTTGCTTATTAATGATATATCAAAAATGAAAATGACTTAAGATAGAGTTAACTAAGGAATTTGAGGTGGGCATGGTTGAAGCATCATATATCATTGGAAGTCAAGTGTCCGGAGACCTAGATATACACATATTAGGATTTATTTTAGAGAAACATTAGCAAAGCATGCTCAAGAGTTTTGAAATATAGAATCGCAATTCAGCTTTTATGACATTAGATTAGAACAATTGTTTTTGAAATTCAATATGCACAGCGGAAAGCTAGTTCAACTATCACCCTTTAACCATTAAGTCAATACAACTTATTGATTATGTTATAAATTAAGTGCATTAATATTAAGTTAGAAGTTATTATATTAAAGTTGTTAGTATAATTTTAATGTATAAACATTAGTGTTATT

Network for GWHGAAEX002234

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	163	214	3.60E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.660
SRP064423	SRR2545915	Juvenile tuber	13.400
SRP108465	SRR5643513	five period of Gastrodia elata	13.410
	SRR5643514	five period of Gastrodia elata	9.710
	SRR5643515	five period of Gastrodia elata	12.980
	SRR5643524	five period of Gastrodia elata	8.300
	SRR5643525	five period of Gastrodia elata	34.770
	SRR5643528	five period of Gastrodia elata	21.100
	SRR5643658	five period of Gastrodia elata	40.630
	SRR5643659	five period of Gastrodia elata	7.340
	SRR5643660	five period of Gastrodia elata	7.870
	SRR5643661	five period of Gastrodia elata	4.880
	SRR5643662	five period of Gastrodia elata	5.970
	SRR5643663	five period of Gastrodia elata	7.460
	SRR5643664	five period of Gastrodia elata	7.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.060
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	19.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.880
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.750
SRP279888	Gastro	Gastrodia elata tuber	12.35
	Juven	Juvenile tuber	31.96
	Mother_Gastro	Mother tuber of Gastrodia elata	35.50
	Mother_Juven	Mother tuber of Juvenile	32.03