Gene detail

Detail information of GWHGAAEX002235/evm.TU.scaffold_119.48

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|310821569\|ref\|YP_003953927.1\|	2.00E-68	enoyl-CoA hydratase/isomerase family protein [Stigmatella aurantiaca DW4/3-1]
KOG	KOG1684	5.00E-169	Enoyl-CoA hydratase
nr	gi\|743769485\|ref\|XP_010915030.1\|	0	PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9T0K7\|HIBC6_ARATH	4.00E-169	3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial (Precursor)
trEMBL	tr\|I1GXN5\|I1GXN5_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G37020.4}
TAIR	AT4G13360	5.00E-169	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	1312985	1377975	-

Transcript Sequence
>GWHTAAEX002235 ATAGTCGTTCTTTGCGCACTCGTGCCGCCTTAATACTCCATCTCGGCAGGCAGCCAATCCATAGAAAAATCGCATTCTCTCCGATCTCTCCCCACAATGGCTAACGCTGCAGAAAATTTTGTCAAGGGAGCCATCTTTTCCAAAGGTGTCGCTGTCATCACCCTTGATCGCCCTAAAGTCCTCAATGCGATGAATTTAGGAATGGACCTTGAATACAAAAATTTTCTTGATGAGTGGGAAACTAACCCCGACGTTAAATGCATTCTGGTAGAGAGCAGTTCACCACGTGCCTTTTCAGCTGGTGGTGATGTCAAGCCGATTCTGATTAATCGTGATTTGTCAGAAATATCTAAGGTCTTCACCGCCGAATATTCTTTGGTCTGTAGGATCCACGAATATAAAAAGCCATATATTTGCTTGATGGATGGAATGACAATGGGATTTGGAATTGGCCTTTCTGGTCATGGCAGCTATCGAATTATCACTGAGAGAACGGTTTTGGCAATGCCAGAAAATGGATTAGGCTTGTTCCCTGATGTTGGATTTTCCTATTTAGCTGCAAAGAGCCCAGGAGATGGTGCTGTTGGTTGTTACCTCGGAATGACAGGAGAAAGAATTTTTGATGCTAGTGATGCATTATACGTGGGCCTTGGAACACACTTTGTCCCTTCAGACAGATTGCCTTCACTCAAGAAGGCACTGTTAGAACTAAACTTGTCTGATAACCCTCATGAAGATGTACAGTCATTGATGGCAGACTACGTGGAAGATCCAAAGGACGAGCCTCGGTTGAAAAATCTTTTGCCATACATTGTCTCAGCCTTTGGGAGGGATAAATCAGTTTTTCAAACAGTAGATGAGTTGAAGAAGCTTCAATCAAGCAGTAGTGATTCAACAGTAACAGAATGGGCGAGTGATGCCCTTACAGGCCTTCAAAGAGGCGCTCCTTTTTCTCTTTTTCTTGCTCAGAGGCATTTCTCCCGAGTTGCATCTGCATTCGGAAATGATCAACACCCTTTGTCCACACTAACTGGTGTGATGAAAACCGAGTATCGAATGGCACTGAGAACTTCGGTTCGAAATGATTTTGCTGAAGGTGTTCGTGCGGTCTTGGTGGATAAGGACCAGAAACCTAACTGGAATCCTTCGAGGTTGGAAGATGTCGACATGAAAGAAGTGGAAGAAGCATTGTGTGATGCGCTGGCATTCGCACCTCCCGACGAAGAGTTGCAGCTGCATTGAAATAAATCACCACAAAAAATGATGCAGCTACGGCCGCAGGAGTCTCATCTGCTCTTATAGCCTTACTTCTTGTTTTCAATGTAATTTTATCTATGATTTTTTATTTTTTTCCTACTAAATTAAGCCTTAATAAAGCAATTATATGATCTGTATTTGAATTTTTTATCCATCAAAATTTAAATTCAAGAGCTCAACTATTCACCAGAATATCATTCACATGCATGATTTTTTTCATACTTGTATTCGTTCTATTTTGTG

Network for GWHGAAEX002235

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.4	ECH_2	19	364	6.60E-102

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Cysteine and methionine metabolism	map00270
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	Molecular Function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.750
SRP064423	SRR2545915	Juvenile tuber	56.900
SRP108465	SRR5643513	five period of Gastrodia elata	21.370
	SRR5643514	five period of Gastrodia elata	28.790
	SRR5643515	five period of Gastrodia elata	23.350
	SRR5643524	five period of Gastrodia elata	26.350
	SRR5643525	five period of Gastrodia elata	10.080
	SRR5643528	five period of Gastrodia elata	14.600
	SRR5643658	five period of Gastrodia elata	12.370
	SRR5643659	five period of Gastrodia elata	18.290
	SRR5643660	five period of Gastrodia elata	19.770
	SRR5643661	five period of Gastrodia elata	19.430
	SRR5643662	five period of Gastrodia elata	21.700
	SRR5643663	five period of Gastrodia elata	19.690
	SRR5643664	five period of Gastrodia elata	18.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.410
SRP279888	Gastro	Gastrodia elata tuber	33.39
	Juven	Juvenile tuber	37.59
	Mother_Gastro	Mother tuber of Gastrodia elata	50.91
	Mother_Juven	Mother tuber of Juvenile	64.42