Gene detail

Detail information of GWHGAAEX002238/evm.TU.scaffold_119.50

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0864	7.00E-89	Ran-binding protein RANBP1 and related RanBD domain proteins
nr	gi\|567868865\|ref\|XP_006427054.1\|	2.10E-113	hypothetical protein CICLE_v10025626mg [Citrus clementina]
Swissprot	tr\|Q9LW88\|NU50B_ARATH	2.00E-89	Nuclear pore complex protein NUP50B {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|V4SN27\|V4SN27_9ROSI	8.00E-114	Uncharacterized protein {ECO:0000313\|EMBL:ESR40295.1}
TAIR	AT3G15970	7.00E-89	NUP50 (Nucleoporin 50 kDa) protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	1423060	1448620	-

Transcript Sequence
>GWHTAAEX002238 ATTAGCTTCAGATCTCTAACCCGATAGAATTTCCTAATTCGTTGCAAACCCTATTTCCTATACTCGCTGTTGCTCCCTGCTGCTGGTTCTTGCAGTCCAGCTGTTTCGCAGCTCTCTTCTCCTTACGCAACGACAGGCGCGATTGCAGGCGCAACGTCGCCAAGAGCCATCGATAGGATTGCTTTCTTCCCAATCGAGCGCAGTTACTAGGTGGAGACTATTTTCTTCAGTGTCAGCCGTTTAAACTTTGTATATTTAGATAAATGGCTGATGCTGAAAATACTGTAGCAACGAAGAAGAGGGTTGCTGGAAGGCAGATATCTAAAGATAACCTGGAACTTGATGATGATTTTTCTGAATCAGAGATGGGAACTTTTCAAAGGGCCAGCGAAGAAGTACTGGCAACTAGGAGAATTGTAAAAGTCCGGCGTCAGCAGCCCGCTTCAAATGCTTCTTCAAATCCATTTGCTGGGATACGCTTAGTTTCCTCATCTGAGCCAAATGCAAAAACAGATGCTCAAGTTGAGTTTCAAAGCCCTACCGATAAACAACAGCCAAACAAAGTTAATGATAAAAATGAAGTTTTATTGGATGAGGTAAATGGAACAGGTGAGAGCAAGAAGCACTCAGAATGCAATACAGGCACACAGGAAGCTACTGTTAATGAAATAGAGAGAAAGACTTTCGAAGTAGTAGTATCTCAGCCATTGGAAACTGCTGCAGACGTAAAAGATGTAAAAAATGAATTTGATGGAAGTTTGACTAACAAGCCAGATAATAAAAACTCGGAAGAAGTTGATGGCCAAGCTGTAGAAAATCCCAAGGAAGCTTCTGAAGAAATCCAAGAGGAAGTTTTAAAAATGTCTAGGAAGAATGTTGAACGAACCATGGAAGGTGAGGCAGAGGAAAACAACCTGAAAGAAGTCTCAAGCGCCGCTTCAACCTTTAGCTCATTTGGACAATTGTCTAGCAGCCAAAATGCCTTTACAAGCCTTTCTGGAACAGGATTTGAAACTTCCTCATTTTCCTTTGGGCCATTAAAAGATGATGGTTCTACCTTCAATTCCTTCAGTTTTACAAGCACTAACAATGGAACATCGTCGATGCCTCTATTTTGTTTTTCTGGGACAGAATCTGCTAAGAATGGGGTGGCTGGTGGACCTTCCTTGCAGGAGGTTCCTGTTGAGACCGGTGAGGAGAATGAGAAGTCAGTATTTACTGCAGATGCAACGCTATATGAATATCTTGATGGTTCTTGGAAAGAACGAGGAAGGGGCGAAGTTAAAGTGAATATTTCTGTGTCAGGTGAGAAGGCAAGGCTTGTTATGAGGGCTAAGGGTAATTACAGATTGATTTTGAATGCTAACCTTTACAAAGATATGACGTTGGCTAATATGGATAAGAAGGGCATTTCCTTTTCCTGTATCAACAGCGCTGGAGAAGGAAGCGCTGGCCTGACTACATTTGCTCTTAAATTTAGAGACAGCAGTTTTGCCGAAGAGTTCTGCGGTGTAGTCACAGAACATAAGGGGAAGAATGTCATTGCACCAAAGACGCCAGAAAGCTCTCCTAAAGCGTCTGATGAGTAAAAGGGAAAAAGTAGACTTATACTATGGTTTAAGCTATAATATAATATTTTACATATTGTAGCTATAGGTTGAAATTCTTCTGAATTTTCGATCTGCAGTCAGTGTATCGACTGTTCCATCTTTTTTTTGTGATCATGCAATTTGCCAAACGGTCTTATACATTGGACAATTTGGTCATGCATCAATGGTTCTTTTTTGATTTTTTCCTCTTATTTTGTCAAGCA

Network for GWHGAAEX002238

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08911.10	NUP50	12	71	8.20E-15
PF00638.17	Ran_BP1	307	420	4.50E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046907	Biological Process	intracellular transport
GO:0005643	Cellular Component	nuclear pore

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	115.450
SRP064423	SRR2545915	Juvenile tuber	90.460
SRP108465	SRR5643513	five period of Gastrodia elata	52.650
	SRR5643514	five period of Gastrodia elata	51.650
	SRR5643515	five period of Gastrodia elata	51.630
	SRR5643524	five period of Gastrodia elata	49.260
	SRR5643525	five period of Gastrodia elata	58.870
	SRR5643528	five period of Gastrodia elata	58.920
	SRR5643658	five period of Gastrodia elata	57.190
	SRR5643659	five period of Gastrodia elata	60.350
	SRR5643660	five period of Gastrodia elata	62.960
	SRR5643661	five period of Gastrodia elata	56.760
	SRR5643662	five period of Gastrodia elata	47.430
	SRR5643663	five period of Gastrodia elata	49.550
	SRR5643664	five period of Gastrodia elata	52.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	58.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	60.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	80.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	92.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	73.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	73.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	57.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	62.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.960
SRP279888	Gastro	Gastrodia elata tuber	71.37
	Juven	Juvenile tuber	48.91
	Mother_Gastro	Mother tuber of Gastrodia elata	49.55
	Mother_Juven	Mother tuber of Juvenile	45.89