Detail information of GWHGAAEX002240/evm.TU.scaffold_119.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15668838|ref|NP_247641.1| | 2.00E-08 | 50S ribosomal protein L14e [Methanocaldococcus jannaschii DSM 2661] |
| KOG | KOG3421 | 3.00E-71 | 60S ribosomal protein L14 |
| nr | gi|470107261|ref|XP_004289967.1| | 4.76E-77 | PREDICTED: 60S ribosomal protein L14-2-like [Fragaria vesca subsp. vesca] |
| Swissprot | tr|Q9T043|RL142_ARATH | 1.00E-71 | 60S ribosomal protein L14-2 |
| trEMBL | tr|M0RNB8|M0RNB8_MUSAM | 5.00E-77 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P00870_001} |
| TAIR | AT4G27090 | 3.00E-71 | Ribosomal protein L14 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000124 | 1539106 | 1584308 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002240
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01929.16 | Ribosomal_L14e | 45 | 116 | 1.90E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02875 | RP-L14e, RPL14 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 226.500 |
| SRR2545915 | Juvenile tuber | 189.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 231.400 |
| SRR5643514 | five period of Gastrodia elata | 254.540 | |
| SRR5643515 | five period of Gastrodia elata | 224.640 | |
| SRR5643524 | five period of Gastrodia elata | 256.030 | |
| SRR5643525 | five period of Gastrodia elata | 155.810 | |
| SRR5643528 | five period of Gastrodia elata | 178.810 | |
| SRR5643658 | five period of Gastrodia elata | 148.790 | |
| SRR5643659 | five period of Gastrodia elata | 174.420 | |
| SRR5643660 | five period of Gastrodia elata | 168.210 | |
| SRR5643661 | five period of Gastrodia elata | 268.030 | |
| SRR5643662 | five period of Gastrodia elata | 166.500 | |
| SRR5643663 | five period of Gastrodia elata | 173.080 | |
| SRR5643664 | five period of Gastrodia elata | 157.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 150.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 79.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 177.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 164.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 160.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 138.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 176.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 142.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 184.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 184.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 268.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 268.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 153.69 |
| Juven | Juvenile tuber | 164.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 143.42 | |
| Mother_Juven | Mother tuber of Juvenile | 174.16 |