Gene detail

Detail information of GWHGAAEX002244/evm.TU.scaffold_119.56

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672165606\|ref\|XP_008802711.1\|	0	PREDICTED: paramyosin, long form-like [Phoenix dactylifera]
Swissprot	tr\|Q9S9P3\|FDM1_ARATH	1.00E-170	Factor of DNA methylation 1 {ECO:0000303\|PubMed:22302148}
trEMBL	tr\|M0TX43\|M0TX43_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P03340_001}
TAIR	AT1G15910	4.00E-170	XH/XS domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	1723817	1749938	+

Transcript Sequence
>GWHTAAEX002244 GTCGGCAGGAGTCCTAGAGGCTGCGCCTCTCTCACCTCTCGGCTAGAAGCCGAGAGTCTCCTTTCCTCTCGGCAGGAGGCCGAGAGGCTTTCGCCGTCTCATTCCCTCTCGGCTTGGCCGAGAGCAGCTGCCGGTGTCCACTTCCCTCCTGATTCTGCTTCCAGCTTCCGACTTGTCGAGCCCATTCCTTCCTCGCGTTCTCATCAGAACGCAAAGGCACTCGGTTCACAAGAAAAAGAAGGGGGAAGAAACGAGAACGGAAGTCTCGGCAAGCCTCAACCAAAGTTGTAGCTCGTAAATCAGTTATTTTCCATAGATGGATTCAAGCTCTGAAGAAATTTCTGAAATCAGCGATTCAGAAATTGATGATTACGCCTCCAAAACTTATGCCGAACTGAAGACAGAAAAGCTCAAAGTCAAAGGGTCTGATGGGAGCTATAAGTGCCCATTCTGTTTGGGAAAGAAGAGACAAGATTACCAATACATGGCTCTCCTGCAACATGCTTCTGGAATTAGTGCTTCTAACAGGAAAGTGAAAGTTAAGGCAAATCACCAGGCGCTTGTAAAATACTTGAAGAATGATCTTGTTGACACATCAACTTTATCACCACAGTTAATGATTGCAAAACAAGACGCTCCTAAATTTGAACAGTCTGATCAATTTGTTTGGCCATGGATGGGCATTGTTGTGAATATTCCAGTAGAATTCAGGAATGGAAAGTATGTTGGTGAAAGTGGTAATAGACTTAAGGGGCAACTCTCTAGATTTAATCCATTGAAAGTGCATTCTTTATGGAATTTTAAAGGCTTTACTGGAAATGCTGTTGTGGACTTCAGTAAAGACTGGATGGGATTTAAAAATGCAATGGCATTTGAAAATCATTTTGATGCTGACCATTTTGGTAAAAGAGACTGGATTGAGAAAGGGAATCACGGTGTAGGAATTTATGGATGGGTAGCTCGTGCTGTTGACTACAATTCAGGCGGACCCATTGGAGATCATCTACGGAAAAATGGAGATTTGAAAACTGTGGGTGATATAACAGAAGAAGAATCACGTAAGAAAAGCAAACTTGTCCAAGATTTGGCAACGCAGATTGAAGTGAAAAAAAAGCACATTGAGGAGCTTGAGTGTAAATACAATGAAACTAGTTTATCACTTGATAAGACGATGGAAGAAAAGGATAAGCTGCTTGAATTATATAACAACGAAATTCAGAGAATGCAACGTCTTGCCCAAGATCATTCTCGTAGGATTTTCGAGGAGAATGGGAAATTGAGGATAGAGTTGGATTCTAAAATGAATGAGCTTGCATCAAGATCTAAGCAACTCAACGAACTAGTTGCTCAAAGTGATTCTGATAAGAGGAAACTTGAAGATGAGAAACAGAAGAATGCTCTAAAAAATAATTCGCTAGAGTTGGCTTCTATAGAACAGAAAAAGGCTGATGAAGATGTCCTCAAGCTTGTTGAAGTACAGAAAAATGAAAAAGAGGCTGCAATGAAAAAGATTCTTCAGTTAGAGAAACAGCTTGATGCAAAGCAAAAGCTAGAACTTGAAATTCAACAGCTGAAGGGAAATCTACAAGTAATAAAGCGCATGGGAGGTGAAGGTTCTGAAGTTAACATCAAAATTGAGGAGCTGAATGAAGTTTTAAAAGAAAAAATGGAAGAATTGGAAGGTCTCGAAGAACTTAATCAAGCTTTAGTTGTTAAAGAAAGGAAAAGTAACGATGAACTGCAGGAAGCTCGGAAAGAACTAATAGCTGGACTGTCTGAAATTTTGAACAACCGTACAATAATTGGAATTAAGAGGATGGGTGAACTAGATGAAAAGATATTTCATAGTGTATGCATGAAGAAATTTCGGAAAGATATTGCTGATGTAAAGGCTGCAGAACTTTGCTCACAGTGGCAGGATGAACTGAAGAAACCGGAATGGCATCCTTTTAAAGTGACCACAGTTCATGGAAAGCTTCAGGAAGTGATACGAGATGATGACAATAAACTGAATGAGCTGAAGGAAGAATATGGGGACGAAGTCTTAACTGCAGTTTCTTCGGCTTTATTGGAGATGAATGAATATAACCCCAGCGGGAGATACGTCGTTCCGGAGCTCTGGAGCTTCAAAGACGGCCGTAAAGCCACTCTAAAAGAGGTCATACAATACATCCTAAGGCATTGGAAGATCAATAAGAGAAAAAGATGATTCGGCCTCTATAAAAGGAGTCAGGTTGATGAAGAAGTGGTGCCAATCCCCTCTCTCTCTGCTTTTTATCTTGTTTTTTTTGGCTTTCCCTTGAAACAGTATCTGAGGCTTATTTTCAAGCCAATCTTTGAGTTGATGCCATTGCTAATACTATAGTTTTAGAAGTATAAATGATCTGTTATGTAGCCAAAACGGCCCTGGCTTGAGGTTGGCTCAGTGCGGTTTGGGTTCTCAATTTGAGTAATAATTTAGCTTTATTAAGGGTTATCATTGTAGTGCCAAAGCTGCGTACTTTTCCTGGGCTTTCTTATAATAAACTTAGTTTGTGTTTCTTCGAATTGTACTCTTATCACCTGCCTTCTTAGACTTTATGTTGCCTTTTCAATGAATATGC

Network for GWHGAAEX002244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03470.13	zf-XS	43	83	1.70E-15
PF03468.13	XS	114	222	1.90E-39
PF03469.13	XH	499	629	3.70E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0031047	Biological Process	gene silencing by RNA

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	163.770
SRP064423	SRR2545915	Juvenile tuber	145.400
SRP108465	SRR5643513	five period of Gastrodia elata	54.470
	SRR5643514	five period of Gastrodia elata	46.940
	SRR5643515	five period of Gastrodia elata	44.160
	SRR5643524	five period of Gastrodia elata	51.090
	SRR5643525	five period of Gastrodia elata	27.520
	SRR5643528	five period of Gastrodia elata	25.820
	SRR5643658	five period of Gastrodia elata	22.000
	SRR5643659	five period of Gastrodia elata	62.260
	SRR5643660	five period of Gastrodia elata	65.320
	SRR5643661	five period of Gastrodia elata	68.000
	SRR5643662	five period of Gastrodia elata	64.130
	SRR5643663	five period of Gastrodia elata	59.550
	SRR5643664	five period of Gastrodia elata	66.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	96.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	56.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	82.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	103.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	108.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	118.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	99.450
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	106.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	74.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	93.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	69.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	69.850
SRP279888	Gastro	Gastrodia elata tuber	105.93
	Juven	Juvenile tuber	91.60
	Mother_Gastro	Mother tuber of Gastrodia elata	36.25
	Mother_Juven	Mother tuber of Juvenile	59.03