Gene detail

Detail information of GWHGAAEX002251/evm.TU.scaffold_119.63

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|685303893\|ref\|XP_009142659.1\|	5.80E-09	PREDICTED: arabinogalactan peptide 16 [Brassica rapa]
Swissprot	tr\|Q9FK16\|AGP22_ARATH	2.00E-10	Arabinogalactan peptide 22 (Precursor)
trEMBL	tr\|M0ZHF3\|M0ZHF3_SOLTU	1.00E-09	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400000846}
TAIR	AT5G53250	7.00E-10	arabinogalactan protein 22

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	1937847	1940253	-

Transcript Sequence
>GWHTAAEX002251 ATCAGCAATCTGCAGTAAAAATCAGAGAAAAAAAGGTGAATAAGAGATGGGAAGCTTCAAGGCTCTGCTTATCTCCGCCTTCTTCTTGTTCGGACAGATAGCAGATAGCCAAAGTGAGGCACCGGAGGCCGCACCGCCGATGGGAAACGACGGGCAGGTGATCGATCAGGGAATAGCTTACCTGCTTATGCTCGTCGCCCTCGTCCTCACTTATTTTTTTCATTGATTTTTTATGTACTTCTACGGAAAAGCATTTATTTATTTATTAGTTTGTATTGCATATAATTTTCAAGGCAATCTTTGCTATTCATGAAATCAACTTCTTTATCTATATATATATATATGGTTTCAATATAAGTAAAACAGGGGAAACTCGAATCCATAAATGAGTAAACCCTACATTCAAATGCCCTAATTGCACAATAAGTGGAAATACGTTAGTCAAGCCACAATTAATCCTAATCAACTAATCTTCACCTTAGATCACCATGACAACTTAATAAAAGCTAAATTTAGAATAGATAAATATAATTTTGATGTGAATTTTAACCAATTATTTTGGCATTTGTTATGCCCGAACCTCCGAAATAGGATGCCAAAATATTCCCTGTGTTCATTGAATATGGTTCCACTAATAAAATTCAAATTAATGGGAGTTGAAAAGTTAAAATAAAACATTTTCATTTAGAACGATCCTCTATTTTACCACTTCATAGGAACATAGACCCTTTGTACACCATCAATCATAGCCTATGAAGCTCCTCAATTGATTAAGAAGATCTCTAAAACCCCCTATGTGAAATCCTAAAACTCATGTGCTTCCTAAGAATCCCTCTACATTGCATGAGTTAGAACAACGCTATTTTAGATACAAAACATGTTAATGCCTCTCCTTAAGTCCAATCGTAGCATAGTATTGATCTAATGCCAATCAAACCATCAATTCATATTTTTTTCTATCTTGTTGTTGCAAGGCTTATTTTCTATTTATCGAGTTTAGTGAGCTTCATGTGACCCTCTCAATCCATTGAATATAGAGGAGTCCTAAGAAGCTAAGTTAGAGAAACCAAATCATCCATTATTCCATTCTTTCATGTTTCCATTCCTCCTCCATTCAATTGTCTAGAGTTCAATCGTAGCATAAGCTGCATAATTGAACCATCAAATCCAATTTTATTTTGTTTTTGGAAGGCCCAGTTTTCATCGGTACGAGCACTTCTTTAGAGTCTAATAAGCTCCATATGAACCTATAGTCATATGAATCTAGAGGAATCATAAGAAGATATGTTAGAGCATTTTTTTCCATCCTTCCACTCTTCCATTCTTTCTCTATTTAATCAACAATCCTTCCGTGTAACATCAACCCTCAATTAATTCTCTTAATCATGTTTACCTTAATTCAATATAATTGATCCATCTAAAGATGCTAAAATAGAATTAATTTCATAGCATCTAGCCATTAAAATATTATGGGTTTAGGTTTGAATTTAGATTTAAAAGTTTGCAATAATGTTTAGATGAACGCTTTATTTTCTTAGTATATTAATTATAAATCCATTAGAGAACTATTGAGGGATTTTTTTTGCTTAGGTGGTGAGGATGAGCCCTTACATAACTCATAATTACATATCTTAACATCTATTTAATCTTAATATTTCATAATTATATAAAGATTGATCTTTAAGAACAATTTAAGGACATCGAAAAACCATGCTATAAATCTCTAAGTTGTGAAGCTAATTAAGTACCAAAGTTGCAGAAGAAACTTTTGGCTTAATGTTAATGGGGTTATCTTCCTAATGAATGATGACATTAATTTCATTTTAAGAGAAATTTTAAATATTCTCTCTATATTGTAGTGTCAATGATAAAATGATGTTTTGTGATGTTAATTATTCCCAAATATAAGAATATTCATAATTATTCATATCCTTAGATTTGCACATATAAAGTCTATATTAACCCTTCAAATCATCCCCAATGATACATAGGCTTATGAAGAAATACTATTATTTATGAAGAAGCTTATAAGCTTAATTTCATACTTTAATATTTTTTTGATGATATCATTCACCATGAATGCATCTTTAGACCATTAATTACTTGTGTTGACCAATCCTTCATTAATATTCTTATGTAACAACCCATGTTTGTTACTAGGCTAAACCTAGTATAATCAGTCTTAGGTCACTTTCAATAATCTTTAATCATCATTAGAAGTGAACTCCAAAGTTTTGATTTGATTTGGGAATCAATCGGATCAAACCATAGTTTTGGTTAATTAAATAATTAAGGAAAATAAGATAACTATTTTGATCTCAAAATTGAAATTCGAATTTTCCATTGTGCTCGTCACCCCCAAATTAACTAAGGTATATTTTTTGCATTATTAGGGTTTTGGAGTCAT

Network for GWHGAAEX002251

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06376.11	AGP	25	59	5.20E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.080
SRP064423	SRR2545915	Juvenile tuber	7.150
SRP108465	SRR5643513	five period of Gastrodia elata	12.880
	SRR5643514	five period of Gastrodia elata	3.470
	SRR5643515	five period of Gastrodia elata	60.520
	SRR5643524	five period of Gastrodia elata	7.270
	SRR5643525	five period of Gastrodia elata	37.900
	SRR5643528	five period of Gastrodia elata	90.330
	SRR5643658	five period of Gastrodia elata	18.510
	SRR5643659	five period of Gastrodia elata	58.880
	SRR5643660	five period of Gastrodia elata	4.310
	SRR5643661	five period of Gastrodia elata	18.540
	SRR5643662	five period of Gastrodia elata	40.070
	SRR5643663	five period of Gastrodia elata	14.860
	SRR5643664	five period of Gastrodia elata	84.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.500
SRP279888	Gastro	Gastrodia elata tuber	6.10
	Juven	Juvenile tuber	0.28
	Mother_Gastro	Mother tuber of Gastrodia elata	208.37
	Mother_Juven	Mother tuber of Juvenile	39.74