Gene detail

Detail information of GWHGAAEX002260/evm.TU.scaffold_119.77

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	1.00E-10	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
KOG	KOG0619	0	FOG: Leucine rich repeat
nr	gi\|672118299\|ref\|XP_008782357.1\|	0	PREDICTED: putative receptor-like protein kinase At3g46340, partial [Phoenix dactylifera]
Swissprot	tr\|Q9SNA3\|Y3463_ARATH	2.00E-34	Putative receptor-like protein kinase At3g46340 (Precursor)
trEMBL	tr\|B7ZX34\|B7ZX34_MAIZE	0	Uncharacterized protein {ECO:0000313\|EMBL:ACL52483.1}
TAIR	AT1G25570	0	Di-glucose binding protein with Leucine-rich repeat domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	2134493	2212912	+

Transcript Sequence
>GWHTAAEX002260 CCCGCAGTCTTTTATCTATGCGCGGCGAATTCACTCCTCGGCCTCTCTCGCTCGCTCTCTCTCTGGAACAGTCTCTATTCCCTTAACCCTCAGAAAATGTCTCCTGCCCAGTTGTTCTTACTTCTACTTCTTCCCCTCGTAGCATTCACGCCCTCATCGGCCTCCCCTTCTCCATCTAGTTACGGCCTCTCCTATTCCATCGACTGCGGCGGCATCTCCAACTTCACCTCCGATTTCAACCGTCTCTGGCTTTCCGACCGCTATTTCACCGGCGGCGCCATCGGCACCGTCGCCGAACCCCATCGCTTCTTCCAGCCCCAAGAACGCACTCTCCGCTTTTTCCCCCCAAATTCCTTCGGCAAAAAGAGCTGCTACTCTATCCCCGTCCACCCTGGGCGCTACTACTTCCGCTCTTTCACAGTCTACGATAACTACGACTCCAAGATGCGCGATCCCTCTTTCGACGTCTCGATCGAAGGTACTCTCGTCTTCTCCTGGCGCTCTCCATGGCCCGAATCTGTCGCTCGAAGTGGCGCCTACGCCGATCTGTTCTCTCTCGTCACCGATGGATCCGCCGACCTCTGCTTCTACTCCATCGCCACCGATCCTCCCCTCGTCGCTTCGATCGAAGTCTTCGAGATAGACCGCCTCGCTTACGAGGCTGCTACAGCGGGATCCGGCTTCCTTCTTGTCAACTACGGTAGGCTTTCCTGCGGATCTGCGCTCTTCGGGCCTGGCTTTACGAATCACTCCGATCTCTTCGGCCGTGTGTGGCAATCTGACGCTGATTTCCGCTCACCGGGCGTCAAAGTGAAATCCCTTTCAGCAGGCGGCCGCATTGTGCTCGGCGGAGCGCATGCACCTAACTATTTTCCGCCTCAGCTGTATCTGACCGCCGTCACGCCAGAGCAGCCTGGGTTAGGGCTTGAGTATCTTCTCCAAGTGGACACTAGGATCGACTACATGATCTGGTTCCATTTCGCCGAAATTGATTCAGGCGTCAATGCCGCCGGGATTAGGGTTTTCGATATCCTTATCAACGGGAAGGCCGTCCAGAGGGTTGATATATTCAAGGCGGTTGGCGGTTTTGCAGCGTTCGATTGGCACTACATTGCGAAGAATCTGACAACATCGCCGCTTACTTTGAAGCTTGTTCCTGTTGTTGGAAAGCCCATCATTTGTGGACTTGAGAATTATGCTATGGTGCCTTTGGATGTTGCGACTGTGCCCACCCAAGCAATTGCGATGAGGGCGTTGAAAGAGTCGCTTAGAATACCTGATAGAATGGGATGGAACGGGGATCCTTGTGCTCCTACTACATGGGATGCGTGGGAGGGAGTCACTTGCCATCGGACAGATGCAGGGCTTGTCATTACCCAGCTTGATCTTGGGAGCCAGGGTTTGAAAGGTTATGTTGGTGACCAAATAAGCCTACTATCGAACTTGGTAAGCTTGAATTTAAGCTCCAACTCATTGAATGGAGAATTGCCATCAGGTCTATGCCTAAAATCTCTTATCAAACTGGACTTATCTAGAAATCAATTTACTGGGAGTATTCCGGAAAACCTAGGGTCATCAAATTTGCAACTAGTCTTGTTAAATGATAATGAATTGGAAGGACAAGTTCCAGAAAAGCTATATTCTGTTGGCGTGCATGGTGGAGTAATTGATCTTTCAGGAAATAGTGGGTTATGTGGGGTGCCTTCTTTGCCAGCATGCCCCTTCTTTTGGTATAAAAGGAAGCTGTCTACTCGAGGAAAGATTGCAATTGCACTGTCATGTGGGGTTGTCATCAGCTTCCTTTTGGTTGTGTATGCAGTATGTATCAAAAGGGGAAGGAATGATTATGATTTTGGCCCACCTCAAGATTTACTATCCACAGCAGTGGCTTCGAAGCGAAACAGATACCAAAGGCAGAAAATGCTTCTTGAGATGGAAACGCTGCATTCTGACGGATTTGCGGCCCGAATGAGCCCTCGTTGACACTCTTCTGTTAAGCTTTTGCTGGAACCGTGCAGAGCTTATTCTTTGGCTGGACGAAATAGTTGGCTTATCTAAATATATGGGAAGACGATCAAACAGACAAGCCAAAATATAGTTATTTATTCGATGCAGAGGAATCTCCTTTGCGCAAAAGGATTGTATGCCACCCGTTTGATTTGGCGCCGAAGCCCAACGCGCCTTCTGTTCTCTCTTGCTGTTTGTGCGCAGGAAGATTTTATGAGGTTTGTTGTACACATGGAGAAGTGCTTTCCTGTGGGCCAATTCAACGTATGATTTGTTGTCCTTTTTGTGTTTTTTTTACCAATTTAATTGCAGTCGTATTTCTTTTAGATATTTATAAAGTTAACACCTTATCGTATCTCATGTTCCGCTTGTCAAGTGAGAAATTGGGCGGTAGTTTTGTAAAAGTAGGAACTTATGTGTTGGATATGTAAATAAGAATATTTACTTTCAATTTTCTCC

Network for GWHGAAEX002260

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.6	Malectin_like	67	400	4.00E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.810
SRP064423	SRR2545915	Juvenile tuber	6.040
SRP108465	SRR5643513	five period of Gastrodia elata	7.860
	SRR5643514	five period of Gastrodia elata	4.770
	SRR5643515	five period of Gastrodia elata	7.130
	SRR5643524	five period of Gastrodia elata	5.710
	SRR5643525	five period of Gastrodia elata	6.580
	SRR5643528	five period of Gastrodia elata	5.000
	SRR5643658	five period of Gastrodia elata	6.440
	SRR5643659	five period of Gastrodia elata	11.690
	SRR5643660	five period of Gastrodia elata	9.230
	SRR5643661	five period of Gastrodia elata	11.140
	SRR5643662	five period of Gastrodia elata	9.230
	SRR5643663	five period of Gastrodia elata	10.640
	SRR5643664	five period of Gastrodia elata	8.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.300
SRP279888	Gastro	Gastrodia elata tuber	7.26
	Juven	Juvenile tuber	7.91
	Mother_Gastro	Mother tuber of Gastrodia elata	7.27
	Mother_Juven	Mother tuber of Juvenile	5.12