Gene detail

Detail information of GWHGAAEX002266/evm.TU.scaffold_119.84

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|433606736\|ref\|YP_007039105.1\|	6.00E-08	hypothetical protein BN6_49630 [Saccharothrix espanaensis DSM 44229]
KOG	KOG1703	0	Adaptor protein Enigma and related PDZ-LIM proteins
nr	gi\|672124241\|ref\|XP_008785495.1\|	0	PREDICTED: protein DA1-related 2 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q0WSN2\|DAR2_ARATH	0	Protein DA1-related 2
trEMBL	tr\|M0RER2\|M0RER2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P02350_001}
TAIR	AT1G19270	0	DA1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	2372072	2401089	-

Transcript Sequence
>GWHTAAEX002266 CCTGAACAGCGCGCGCATCAGTTGTTTCATATTTGTGTTCTCTCTCTTTGCTTGCTTGCGCGTTGGGAATCTCTTCTTTCTCCCTCTCTTTTGCTTTCTGCTCATATTCTCTTCGCCACCCTCTTCCTCCTCCCCTCTAGCGGAGGATATATTCTTTAGACTTTTGAGATGCTTTGGATGTGCGCAGATGCTCCTCCCTCTCATTTTAATGCCTTCCTTTCCTTCCACACTTCACCTTTATTATCTTCCAACTTTTCACTTCTTATCACCCGAAAATTTTCGACAATCAAAGCTCCTTTTTACTTTCTTTCCTTCTTTCTTTCTTTCCCTTTTTTTTTCGTTCTGTTTCAACTAGAGATAGCGTCACCCCATTCCTATGGCTTCCTCCGATGTCAACCATCTCTCGCAGCCTTGCATCTACGGGCAAACTGAATCGCCATGCAATCAGAGAAAATCTGGTCTTTTGAAGTGGTTTAGCAAGCTCTTTAAAGGATCCAGCAGAGGAACAACAAATGGTAGGCGCCCACAAATTGTTGGGGAAGATAACCTGTTTTGGCATGGGCCAAGTAGATCAATGGATGACCGATCTCGAGCTGAAAATGAAGATCTTGAACGTGCAATTTCTCTTTCACTTGCTGAGGATGCAAAGAAACGAAATGGATGCAAAGGGCTGGGTTATGAGGGTGGAGACTTTACCAGAACTGGAGAAAATTTGGGTGGCTTGCCTTCATTTGGTCCATATAATCCCAATCCTATACAATTTGTACCTAGAGGATTTAGATTGTGTGAAGGCTGCAAACAAGAAATAGGATATGGCCAATACTTGAGCTGCTTGGGAACCTTCTGGCATCCGCACTGTTTTCGCTGCTATTCTTGTGGTCGACCAATCTATGAAACTGAGTTTTCTTTGTCAGGGAGCTATCCATACCACAAAACTTGCTACAAGGAACTGCATCATCCAAAGTGTGATATCTGTCATCTATTTATACCAACAAATTTGGCTGGTTTGATTGAGTATAGAGCTCATCCTTTTTGGGGCCAGAAATACTGTCCTTCACACGAACATGACAGCACACCACGCTGCTGTAGCTGTGAACGAATGGAGTCAAGAAGCGCAAGATACATTGCTCTGGGAGATGGGCGCAGCCTTTGCTTGGAATGCTTGGATTCTGCTGTCATGGATACCGGTGAATGTCAACCATTATACCATGCTATTCGAGATTTTTATGAAGGCATGTATATGAAGATTGACCAACAGATCCCAATGCTACTGGTTGAAAGGCAAGCACTTAATGAAGCCATGGAAGGAGAAAAAGATGGATCTCACCACGTGCCTGAAACAAGGGGATTATGCCTGTCAGAGGAACAAACAGTTAGCAGTATACATAAAAAACCAAGAATTGGAAAAAATAGAATTTTGGACATGAGAACATGCCCTCAAAAGTTGATCCGTAGATGTGAAGTAACTGCAATCCTTGTTTTATATGGACTTCCCAGACTATTAACAGGTTCCATTCTTGCCCATGAGTTGATGCATGGCTGGCTTCGGCTCAAAGGCTATCGAAATCTTAGCCCGGCGGTGGAGGAAGGCATCTGTCAGGTCCTCTCTCATATGTGGCTTGAATCCGAGGTGATGCCGGGGCCGAGCTTTGCACCATCCCATGCAAATCATGCCTCCTCGTCCACTTCTTCCATGCCTTCGTATAAAAAAGGCGGAAAATCTGAAATCGAGAAAAAGCTCGGCGAGTTCTTCATGCATCAAATAGCTCACGACATCTCGCCTGCGTATGGGGAAGGCTTCAGAATGGCATATGCTGCTGTTAATAAGTACGGGCTTCGCCGGACATTGGATCACATCCTGCGTACAGCAAACTTTCCCATTTGAAAATTCGTATATGTATATGCTATATGCCATATGCACTAATGAAAGTTTGTATTGTTTGCTCCGTCCTTTTACTTGGGGCATTCAGTGATTGTTATTCTGTCTCGCATTGAATCAAACAACTTGTAGTTTGCATTATAATAATAAATTCCTGCAAGAGGAAGCGTGTGGATAATAAGCAGAGCCTCATTCAAACGTTGTAATTATTCATAGTATAATCATGTTGATGGAACTGTTAAAAACACAAACATATTCTATTATTTATTGAGCAGGCTTCACTTGTTTATAGCAATAAAGCAAAGAAGCAAGTTGCATCTAATGTAATTGTCTTAATAGTTTTCTAGTGAAGCAT

Network for GWHGAAEX002266

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00412.21	LIM	137	191	1.00E-08
PF12315.7	DA1-like	286	496	3.40E-96

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.850
SRP064423	SRR2545915	Juvenile tuber	11.190
SRP108465	SRR5643513	five period of Gastrodia elata	12.670
	SRR5643514	five period of Gastrodia elata	9.940
	SRR5643515	five period of Gastrodia elata	12.820
	SRR5643524	five period of Gastrodia elata	10.620
	SRR5643525	five period of Gastrodia elata	19.040
	SRR5643528	five period of Gastrodia elata	14.980
	SRR5643658	five period of Gastrodia elata	12.440
	SRR5643659	five period of Gastrodia elata	4.220
	SRR5643660	five period of Gastrodia elata	3.660
	SRR5643661	five period of Gastrodia elata	5.400
	SRR5643662	five period of Gastrodia elata	5.380
	SRR5643663	five period of Gastrodia elata	4.530
	SRR5643664	five period of Gastrodia elata	6.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.040
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.780
SRP279888	Gastro	Gastrodia elata tuber	17.36
	Juven	Juvenile tuber	7.36
	Mother_Gastro	Mother tuber of Gastrodia elata	18.26
	Mother_Juven	Mother tuber of Juvenile	8.41