Detail information of GWHGAAEX002268/evm.TU.scaffold_119.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 1.00E-28 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0087 | 3.00E-128 | GTPase Rab11/YPT3, small G protein superfamily |
| nr | gi|672182512|ref|XP_008811507.1| | 1.58E-132 | PREDICTED: ras-related protein Rab11C isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q40193|RB11C_LOTJA | 1.00E-130 | Ras-related protein Rab11C |
| trEMBL | tr|B4F7V4|B4F7V4_MAIZE | 7.00E-130 | Uncharacterized protein {ECO:0000313|EMBL:ACF78197.1, ECO:0000313|EnsemblPlants:GRMZM2G144008_P01} |
| TAIR | AT1G07410 | 3.00E-128 | RAB GTPase homolog A2B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000124 | 2492384 | 2500275 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002268
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 14 | 173 | 1.60E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07904 | RAB11A | Endocytosis | map04144 |
| Pancreatic secretion | map04972 | ||
| Vasopressin-regulated water reabsorption | map04962 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.140 |
| SRR2545915 | Juvenile tuber | 22.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 60.540 |
| SRR5643514 | five period of Gastrodia elata | 55.300 | |
| SRR5643515 | five period of Gastrodia elata | 63.550 | |
| SRR5643524 | five period of Gastrodia elata | 59.550 | |
| SRR5643525 | five period of Gastrodia elata | 114.940 | |
| SRR5643528 | five period of Gastrodia elata | 116.310 | |
| SRR5643658 | five period of Gastrodia elata | 94.570 | |
| SRR5643659 | five period of Gastrodia elata | 54.820 | |
| SRR5643660 | five period of Gastrodia elata | 53.910 | |
| SRR5643661 | five period of Gastrodia elata | 60.930 | |
| SRR5643662 | five period of Gastrodia elata | 56.900 | |
| SRR5643663 | five period of Gastrodia elata | 61.520 | |
| SRR5643664 | five period of Gastrodia elata | 59.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 62.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 88.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 72.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 53.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 55.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 50.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 75.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 69.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 130.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 130.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.92 |
| Juven | Juvenile tuber | 39.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 86.80 | |
| Mother_Juven | Mother tuber of Juvenile | 75.40 |