Detail information of GWHGAAEX002269/evm.TU.scaffold_119.89


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34738.00E-32RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C
nrgi|747084722|ref|XP_011089784.1|4.38E-41PREDICTED: transcription elongation factor B polypeptide 1 isoform X1 [Sesamum indicum]
trEMBLtr|A0A022R6D2|A0A022R6D2_ERYGU5.00E-41Uncharacterized protein {ECO:0000313|EMBL:EYU35243.1}
TAIRAT5G591408.00E-32BTB/POZ domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012425502582554066+
Transcript Sequence

Network for GWHGAAEX002269

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03931.14Skp1_POZ6663.60E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03872ELOC, TCEB1 Ubiquitin mediated proteolysis map04120
HIF-1 signaling pathwaymap04066

Gene Ontology

GO term OntologyName
GO:0006511Biological Processubiquitin-dependent protein catabolic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.050
SRR2545915Juvenile tuber31.720
SRP108465SRR5643513five period of Gastrodia elata36.260
SRR5643514five period of Gastrodia elata44.130
SRR5643515five period of Gastrodia elata32.480
SRR5643524five period of Gastrodia elata44.010
SRR5643525five period of Gastrodia elata44.030
SRR5643528five period of Gastrodia elata57.410
SRR5643658five period of Gastrodia elata51.300
SRR5643659five period of Gastrodia elata33.970
SRR5643660five period of Gastrodia elata29.440
SRR5643661five period of Gastrodia elata33.950
SRR5643662five period of Gastrodia elata29.300
SRR5643663five period of Gastrodia elata33.030
SRR5643664five period of Gastrodia elata27.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.000
SRR6049655Rhizomagastrodiae_C368-T10_good_137.040
SRR6049656Rhizomagastrodiae_C368-T07_good_125.610
SRR6049657Rhizomagastrodiae_C368-T07_good_124.850
SRR6049658Rhizomagastrodiae_C368-T04_good_135.460
SRR6049659Rhizomagastrodiae_C368-T04_good_132.230
SRR6049660Rhizomagastrodiae_C368-T01_good_125.200
SRR6049661Rhizomagastrodiae_C368-T04_good_132.570
SRR6049662Rhizomagastrodiae_C368-T01_good_130.240
SRR6049663Rhizomagastrodiae_C368-T01_good_132.580
SRR6049664Rhizomagastrodiae_C368-T10_good_130.930
SRR6049665Rhizomagastrodiae_C368-T10_good_130.930
SRP279888GastroGastrodia elata tuber 20.61
JuvenJuvenile tuber19.46
Mother_GastroMother tuber of Gastrodia elata 26.79
Mother_JuvenMother tuber of Juvenile 23.83