Gene detail

Detail information of GWHGAAEX002276/evm.TU.scaffold_119.98

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|115452131\|ref\|NP_001049666.1\|	6.99E-72	Os03g0267600 [Oryza sativa Japonica Group]
trEMBL	tr\|Q10NJ8\|Q10NJ8_ORYSJ	3.00E-72	cDNA clone:J023142F14, full insert sequence {ECO:0000313\|EMBL:BAG93146.1}
trEMBL	tr\|Q10NJ8\|Q10NJ8_ORYSJ	2.00E-10	cDNA clone:J023142F14, full insert sequence {ECO:0000313\|EMBL:BAG93146.1}
TAIR	AT2G29510	3.00E-40	Protein of unknown function (DUF3527)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000124	2755064	2757511	+

Transcript Sequence
>GWHTAAEX002276 ATGCATTCCAATTTGTGCCATGAGCCTGCCAAAGATGGAGAAGCCTCTACGTTAAATTGCATAACACCAATAAAAAATGTTTCAATTCAGGCACATCTGCCCTCTAAATTTATTAACGAAAGATTAGCAATGCCCAGGGTTAGAGGTGCAAATTTAGCAGATGAAAGCAGGCCCTTCAGATGTAGGAGACCGCTCTCTGGGAGGCCTCTTTCTGAATCTTTAACTACAGAAATCGAAGTTTTGGCCTTGTCATCATCACCAATACACTTAAAGAAACCATGGCCGAGTAGAAAAGGAGCTGCAGCGGAAGAGCTAGTTAAGTACATGTCAAGTGTCCCAGGCTATCTCCAGCGTGTAGAAAGGGGAGAAAATGTTCAGGAAAAAGCACTACATTTTGGTGTTATTGATTGGAGGCGTCTTGAGAAATGGACAAGCAGCCAGGAAACAGATAATAAGAATGTGGCTTCATTCGCTATAAATAATACCGATTTGCCTTCTTCTTTTGAAAATCAAGCAAGCTCATACCCTGCTACCAGCAGTTGCGGCTCTCCTGCTCAGCGAAGGGAAACCACTTCTTTAGAAGGTCACTGGGATCGGCCTGCTGATTCCAAACATGAATATATAACTTTTATGCAGGCTGAAGCAGGCTCGTTGATGGAGGAAGAGAAGCTGCAAAGTTCTATTCTCGGTGGGCTGTCTACTGATAGGCTAGTGGAATTGACTTTTGAGGACCATGAACATGTTTTAGATCATCTTCAAGGGTCTAGTTATGTAAACGGTAAACCTTTATCCACAATACATGGAGATACGAAGAATGTAGAAATGTGTGCTGCTTCTTCTGGAAATGTTTCTGAAAATTATTCTGCTGAATGCAGTATATCTCATGACATTCTACAATCTGGCTTTCTCCCTGATTTGTTCAAAAGTGCTGCTGCTATTTCAACAAAGAATGGAGTCACTTCCACAAAATTTATGACAGAAAAGGAGGTAGGCTACGAGAATGACAATTGTTCCTGGAATTCTGTGGCTTGCACTGATGAAAAATCTAGTCAAGTGGTGGATGGAATCAATGCTGGAAGAAAAGATCATTTGCGCCAACATCCCTCTAATTCTGGTCTGAAATGGCTTAATCATAGCTCTAGTTTGAAAAATATGCCATCAAGCCATCAGCATAATGATACCAGTGGCTTAGATATTTCAGATGACAAAGGAAGAAGCTGCAGTAGGGGGAGAAGAAGCCCTTTGAGGAGAATATTAGATCCGCTGCTAAAGTCAATATATGATGGTAATTCTGAGCCAATTGCAACCTCACCAATTCATCATTCCCAAAAACATTACAATGACGGCACTTGTTCAGCTGGAAATGAATCTTTTTTAATGAATACAACACATAGACTTTCTAATGCTAGCAATAGCCAAGTCCCTCTTATTAACGCCCAGGGTTTATTCAAGGAGCAGGAGCATAAAGTACCGATGAAGCAAGCTCTTTTGAAGCTTGCTTGGAAGAATGGCCAGCCACTCTTTATATTCTCAACCAATAACTGCAGTGTGCTTGTAGCCTCGATGAGAAGAACAAATAGATTGGACAAGGAAGATTCTGACTGTGTATATACGATACTTACAGCCCGAGAGTCAAAGAAGAAAGGCGGGATCTTGATTGGCCATAGCAAGGGTAGAAAGCCGAATCTGCTTTATGATGTAGTGGGACGTGTAGAAGTTTCATATTCTAATTTTTCAAGCTCTGATTCTAAGAATCTTGAGTTCTCCAAGCAGTTTGTTTTGGTTGGTGATGAACTCTTGCCAAGTGAAGGATCCGCAGATTCGGTGCACAGCAGTGAGCTTGCTGCCATAATTGTTAAAACTCAGTATCAAAAGATGATGGGCTCAGATCATAATGCTTCAAGTATTAGCATCTCAGTCATTCTCCCTAGTGGGATCCATGGTTTCTCAGATTCAGGAATGCCGTCGAGTCTAATAAACCGATGGAAATCGGGAGGTTTGTGTGATTGTGGTGGATGGGATGAGGGTTGTAGGCTCACAATTCTTTCCGACAGGCTTCATGAAACAAAGGTTGCCAGTTCGGTTCAGAATAGTAGCTGTGTCAAACTGTTTGTTCAGGGAGGAAAAGTAGAAATCAAGCATGCTTTTAGCATGATTGCTTTCAAGGAGGGTCTCCACACCATCGAGTTTGCCTCGTCGATTACATCATTGCAAGCTTTCTCTGTTTGTATTGCTACTCTACACGACAGTTGCCTGCATGAAAAATTTTCGGGGATCAATATTATGCAGGATGATGATGATGGCTTGACGAGTAAAAAGACTCACCATCCCCCCTTTTCGCCTGTTGGCAGATCTTAG

Network for GWHGAAEX002276

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12043.7	DUF3527	493	597	5.20E-10
PF12043.7	DUF3527	626	749	4.10E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.110
SRP064423	SRR2545915	Juvenile tuber	25.170
SRP108465	SRR5643513	five period of Gastrodia elata	19.240
	SRR5643514	five period of Gastrodia elata	24.740
	SRR5643515	five period of Gastrodia elata	17.670
	SRR5643524	five period of Gastrodia elata	23.570
	SRR5643525	five period of Gastrodia elata	12.650
	SRR5643528	five period of Gastrodia elata	11.870
	SRR5643658	five period of Gastrodia elata	10.720
	SRR5643659	five period of Gastrodia elata	9.370
	SRR5643660	five period of Gastrodia elata	7.300
	SRR5643661	five period of Gastrodia elata	7.950
	SRR5643662	five period of Gastrodia elata	6.350
	SRR5643663	five period of Gastrodia elata	8.210
	SRR5643664	five period of Gastrodia elata	8.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.080
SRP279888	Gastro	Gastrodia elata tuber	9.62
	Juven	Juvenile tuber	19.84
	Mother_Gastro	Mother tuber of Gastrodia elata	9.20
	Mother_Juven	Mother tuber of Juvenile	3.83