Detail information of GWHGAAEX002283/evm.TU.scaffold_119.108
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|333910866|ref|YP_004484599.1| | 7.00E-25 | DNA polymerase sliding clamp [Methanotorris igneus Kol 5] |
| KOG | KOG1636 | 1.00E-173 | DNA polymerase delta processivity factor (proliferating cell nuclear antigen) |
| nr | gi|747084035|ref|XP_011089408.1| | 0 | PREDICTED: proliferating cell nuclear antigen [Sesamum indicum] |
| Swissprot | tr|O82797|PCNA_TOBAC | 0 | Proliferating cell nuclear antigen |
| trEMBL | tr|D2KQP2|D2KQP2_PERAE | 0 | Proliferating cell nuclear antigen {ECO:0000256|RuleBase:RU000641} |
| TAIR | AT2G29570 | 1.00E-173 | proliferating cell nuclear antigen 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000124 | 3043071 | 3044245 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002283
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00705.17 | PCNA_N | 1 | 125 | 4.60E-58 |
| PF02747.14 | PCNA_C | 127 | 254 | 8.10E-62 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04802 | PCNA | DNA replication | map03030 |
| Base excision repair | map03410 | ||
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 | ||
| Cell cycle | map04110 | ||
| Tight junction | map04530 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006275 | Biological Process | regulation of DNA replication |
| GO:0030337 | Molecular Function | DNA polymerase processivity factor activity |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.020 |
| SRR2545915 | Juvenile tuber | 23.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.660 |
| SRR5643514 | five period of Gastrodia elata | 33.820 | |
| SRR5643515 | five period of Gastrodia elata | 20.380 | |
| SRR5643524 | five period of Gastrodia elata | 25.340 | |
| SRR5643525 | five period of Gastrodia elata | 9.380 | |
| SRR5643528 | five period of Gastrodia elata | 8.420 | |
| SRR5643658 | five period of Gastrodia elata | 7.470 | |
| SRR5643659 | five period of Gastrodia elata | 36.700 | |
| SRR5643660 | five period of Gastrodia elata | 41.380 | |
| SRR5643661 | five period of Gastrodia elata | 41.110 | |
| SRR5643662 | five period of Gastrodia elata | 27.820 | |
| SRR5643663 | five period of Gastrodia elata | 38.710 | |
| SRR5643664 | five period of Gastrodia elata | 19.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 58.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 75.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 87.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 106.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 60.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 100.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 100.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.59 |
| Juven | Juvenile tuber | 34.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.56 | |
| Mother_Juven | Mother tuber of Juvenile | 7.89 |