Detail information of GWHGAAEX002288/evm.TU.scaffold_119.113
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|54308176|ref|YP_129196.1| | 3.00E-26 | hypothetical protein PBPRA0983 [Photobacterium profundum SS9] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|695040009|ref|XP_009407561.1| | 0 | PREDICTED: laccase-22-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q0IQU1|LAC22_ORYSJ | 0 | Laccase-22 (Precursor) |
| trEMBL | tr|W9RP91|W9RP91_9ROSA | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
| TAIR | AT2G38080 | 0 | Laccase/Diphenol oxidase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000124 | 3123061 | 3126684 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002288
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 99 | 209 | 1.50E-42 |
| PF00394.21 | Cu-oxidase | 222 | 372 | 1.60E-40 |
| PF07731.13 | Cu-oxidase_2 | 477 | 608 | 3.90E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046274 | Biological Process | lignin catabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0052716 | Molecular Function | hydroquinone:oxygen oxidoreductase activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.490 |
| SRR2545915 | Juvenile tuber | 2.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.240 |
| SRR5643514 | five period of Gastrodia elata | 2.300 | |
| SRR5643515 | five period of Gastrodia elata | 2.940 | |
| SRR5643524 | five period of Gastrodia elata | 2.240 | |
| SRR5643525 | five period of Gastrodia elata | 324.550 | |
| SRR5643528 | five period of Gastrodia elata | 319.830 | |
| SRR5643658 | five period of Gastrodia elata | 782.350 | |
| SRR5643659 | five period of Gastrodia elata | 1.830 | |
| SRR5643660 | five period of Gastrodia elata | 0.790 | |
| SRR5643661 | five period of Gastrodia elata | 1.060 | |
| SRR5643662 | five period of Gastrodia elata | 6.110 | |
| SRR5643663 | five period of Gastrodia elata | 8.950 | |
| SRR5643664 | five period of Gastrodia elata | 6.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.47 |
| Juven | Juvenile tuber | 2.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.57 | |
| Mother_Juven | Mother tuber of Juvenile | 2.45 |