Gene detail

Detail information of GWHGAAEX002294/CADD00217.1.gene

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0017	4.00E-111	FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
nr	gi\|121501699\|gb\|ABM55240.1\|	1.89E-145	retrotransposon protein [Beta vulgaris]
Swissprot	tr\|P31843\|RRPO_OENBE	4.00E-36	RNA-directed DNA polymerase homolog
trEMBL	tr\|A2I5E5\|A2I5E5_BETVU	7.00E-146	Retrotransposon protein {ECO:0000313\|EMBL:ABM55240.1}
TAIR	AT2G10780	4.00E-111	transposable element gene

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	54541	56507	+

Transcript Sequence
>GWHTAAEX002294 GAAGAATTTGTGAAGGCATTTTTAGGAAAATATGTGCCTCAGTTTGCTAGGCAGACAATGAGAAAAGAGCTCCTAAACATGAAGCAAGGCAGTCACACTGTAACAGAATATGAGGAAGAATTCACTCGTTTAGCTAGCTTTGCTCCAGAGATGGTTACAACGGAAGAAGTCAGGTGTCATTTGTTCCTTAATGGATTAAGGAATAATTTTCAGCATATCTTGACACCCCTTCAGATTTTAAACTTTGCTCAATTAGTAGAAAAAGCTAAGCTCATGGAAGCTCAAGAAGAGCAGTACTCTTCAAAAATGAAAAGGCCAGCATTTTCTCCACATTTTCAATCAAAGAGACAGTAATTCTCAAGACCTCAAGGAAGAGTTTACAATATTCAAAGCAACTCAATTACACCTGCTCCGAGAACACCAAACACTTGCAGATTTTGTGGAAGAATACATAATACAGATAAGTGTTTTACCGGTGAAGGTCAATGCCACCGATGTGGAAGAACAAATTATTCAATAAAGTTCTGTCGTGCTACTTACACCGTAAACGGGCATCAACTCCAAAATCAAGGCAAGGCAGTTATGAGGAATCAAGGAAGACCACCAGCAAACCAAAGAAACAATATTGCATCTTCTAGTAATCCAAGAAATAATCAAGCCCAGGCCAGTATATTCAACCTATCTCAAGAAGAGGCAAGAGATGAACCTGATATGGTCACAGGTATCATTTTATTATTTCAGTACCCTTGTTCAGTTCTTTTTGATTCTGGAGCTACGCATTCTTTTATTATGTCAAAAATGGCTCAACGATATTCATTACCAGTAGAATAACTTTCATCAGCACTTAAAGTCAATTTACCATCAAGAGAGTTTTTAGAGACAAATATCTTTTGTAATTGCAAGTTAGATATAAGTGGAAAATCTTGGGAAGCTAAACTCACTATCATCCCTATAACCACTTTTGATATTATCTTTGGGATGGACTGGATGAGTCAGAATAAGGAATTAATTGATTGTGCAAAGAAGAGAGTATGTATTTATAATGGAAGTAAGAAAGTAACCTTTGTTAGTCAAAATAGTATAATTATTAGCCTTATCCCAGCAAATAAGATTGAAAAGTTCATTAGAAAGAAGTATCCCATATTCTTAACTTTACTCTCAAGTTCTGATGCTAAAAACTACAACTTTGGAAGAAACTCCTATAGTGAAAGAATATGCAGATGTTTTTCCAGAAGAACTTCCAGGTCTGCCACCTCAAAGAGAAGTAGAGTTCAGTATTGATTTAAGTCAAGGAACGAACCCTTTATCAAAAGCTCCATACAGAATAGCATCCAAAGAGTTAAAAGAACTTAAAAATCAACTTTAGAGTTGACTGAAAAAGGATTTATAAGACCAAGTAATTCTCCTTGGGGAGCCCCAGTTTTATTTGTTAAAAAGAAAGATGGAAGTATGCGAATATGTATCGATTACCGGGAATTAAATAAGGTTACTATTAAAAACAAATACCCATTACCAAGAATCGATGATTTATTTGATCAATTAGTTGGTGCTTCCATATTTTCCAAAATTGATTTGAGATTTGGTTATCACCAACTCCGTATCAAAAATGAAGATATTCCTAAATCTGCATTCAGAACACGATATGGGCATTATGAATTCTTGGTGATGCGTTTTGGGTTAACCAATGCCCCATATTATTTTATGGATTTGATGCAGCGAATAATGAAACCCTACTTGGATTCTTTTATCTTCGTCTTCATTGATGATATATTAATTTATTCTAAGAATGCTAAAGAGCATGAAGAGCATCTTAGAATCACCTTGAACTTGTTAAGACAACATCAATTGTACGTCAAATTTTCAAAATATGAATTTTGGCTTCACTCAATCGCCTTCTTAGGCCATATAATTAGCAAGGAAGGAATATCAGTCGATCCAAGTAAGATAAGTGCAATTCAGGATTGGCC

Network for GWHGAAEX002294

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03732.16	Retrotrans_gag	2	67	6.10E-12
PF08284.10	RVP_2	218	347	8.90E-35
PF00078.26	RVT_1	473	633	4.70E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0004190	Molecular Function	aspartic-type endopeptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.310
SRP064423	SRR2545915	Juvenile tuber	0.220
SRP108465	SRR5643513	five period of Gastrodia elata	0.160
	SRR5643514	five period of Gastrodia elata	0.420
	SRR5643515	five period of Gastrodia elata	0.220
	SRR5643524	five period of Gastrodia elata	0.170
	SRR5643525	five period of Gastrodia elata	0.150
	SRR5643528	five period of Gastrodia elata	0.040
	SRR5643658	five period of Gastrodia elata	0.240
	SRR5643659	five period of Gastrodia elata	0.160
	SRR5643660	five period of Gastrodia elata	0.110
	SRR5643661	five period of Gastrodia elata	0.220
	SRR5643662	five period of Gastrodia elata	0.140
	SRR5643663	five period of Gastrodia elata	0.050
	SRR5643664	five period of Gastrodia elata	0.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.020
SRP279888	Gastro	Gastrodia elata tuber	0.23
	Juven	Juvenile tuber	0.19
	Mother_Gastro	Mother tuber of Gastrodia elata	0.30
	Mother_Juven	Mother tuber of Juvenile	0.79