Detail information of GWHGAAEX002299/evm.TU.scaffold_12.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116251654|ref|YP_767492.1| | 3.00E-06 | multicopper oxidase [Rhizobium leguminosarum bv. viciae 3841] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|743780559|ref|XP_010920540.1| | 0 | PREDICTED: laccase-10-like [Elaeis guineensis] |
| Swissprot | tr|Q9FJD5|LAC17_ARATH | 0 | Laccase-17 (Precursor) |
| trEMBL | tr|V4SLG7|V4SLG7_9ROSI | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
| TAIR | AT5G60020 | 0 | laccase 17 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 448795 | 451215 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002299
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 30 | 64 | 3.80E-05 |
| PF00394.21 | Cu-oxidase | 133 | 284 | 3.10E-38 |
| PF07731.13 | Cu-oxidase_2 | 401 | 526 | 2.30E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046274 | Biological Process | lignin catabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0052716 | Molecular Function | hydroquinone:oxygen oxidoreductase activity |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.100 |
| SRR5643514 | five period of Gastrodia elata | 0.180 | |
| SRR5643515 | five period of Gastrodia elata | 0.130 | |
| SRR5643524 | five period of Gastrodia elata | 0.080 | |
| SRR5643525 | five period of Gastrodia elata | 0.180 | |
| SRR5643528 | five period of Gastrodia elata | 0.050 | |
| SRR5643658 | five period of Gastrodia elata | 1.050 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |