Detail information of GWHGAAEX002300/evm.TU.scaffold_12.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|218780797|ref|YP_002432115.1|2.00E-33ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfatibacillum alkenivorans AK-01]
KOGKOG10987.00E-98Putative SAM-dependent rRNA methyltransferase SPB1
nrgi|743786928|ref|XP_010922295.1|2.49E-118PREDICTED: adoMet-dependent rRNA methyltransferase spb1 [Elaeis guineensis]
trEMBLtr|M0TX46|M0TX46_MUSAM2.00E-114Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P03370_001}
TAIRAT5G138307.00E-98FtsJ-like methyltransferase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000009597685620986-
Transcript Sequence

Network for GWHGAAEX002300

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01728.18FtsJ192248.30E-47
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0001510Biological ProcessRNA methylation
GO:0032259Biological Processmethylation
GO:0008168Molecular Functionmethyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.450
SRR2545915Juvenile tuber15.940
SRP108465SRR5643513five period of Gastrodia elata18.900
SRR5643514five period of Gastrodia elata16.760
SRR5643515five period of Gastrodia elata14.410
SRR5643524five period of Gastrodia elata14.560
SRR5643525five period of Gastrodia elata21.040
SRR5643528five period of Gastrodia elata16.780
SRR5643658five period of Gastrodia elata16.100
SRR5643659five period of Gastrodia elata18.890
SRR5643660five period of Gastrodia elata22.040
SRR5643661five period of Gastrodia elata19.890
SRR5643662five period of Gastrodia elata20.070
SRR5643663five period of Gastrodia elata22.500
SRR5643664five period of Gastrodia elata24.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.680
SRR6049655Rhizomagastrodiae_C368-T10_good_110.840
SRR6049656Rhizomagastrodiae_C368-T07_good_117.770
SRR6049657Rhizomagastrodiae_C368-T07_good_112.830
SRR6049658Rhizomagastrodiae_C368-T04_good_115.940
SRR6049659Rhizomagastrodiae_C368-T04_good_113.890
SRR6049660Rhizomagastrodiae_C368-T01_good_115.370
SRR6049661Rhizomagastrodiae_C368-T04_good_112.560
SRR6049662Rhizomagastrodiae_C368-T01_good_111.370
SRR6049663Rhizomagastrodiae_C368-T01_good_111.580
SRR6049664Rhizomagastrodiae_C368-T10_good_116.270
SRR6049665Rhizomagastrodiae_C368-T10_good_116.270
SRP279888GastroGastrodia elata tuber 19.94
JuvenJuvenile tuber21.54
Mother_GastroMother tuber of Gastrodia elata 14.14
Mother_JuvenMother tuber of Juvenile 17.98