Detail information of GWHGAAEX002301/evm.TU.scaffold_12.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0760 | 2.00E-138 | Mitochondrial carrier protein MRS3/4 |
| nr | gi|743781939|ref|XP_010921017.1| | 9.42E-169 | PREDICTED: mitoferrin [Elaeis guineensis] |
| Swissprot | tr|F4HT41|SAMC2_ARATH | 2.00E-39 | Probable S-adenosylmethionine carrier 2, chloroplastic (Precursor) |
| trEMBL | tr|M0UAF9|M0UAF9_MUSAM | 8.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP19000_001} |
| TAIR | AT1G07030 | 2.00E-138 | Mitochondrial substrate carrier family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 731823 | 774182 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002301
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00153.26 | Mito_carr | 33 | 122 | 1.10E-19 |
| PF00153.26 | Mito_carr | 128 | 214 | 6.20E-20 |
| PF00153.26 | Mito_carr | 224 | 316 | 1.90E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.220 |
| SRR2545915 | Juvenile tuber | 10.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.090 |
| SRR5643514 | five period of Gastrodia elata | 10.810 | |
| SRR5643515 | five period of Gastrodia elata | 9.710 | |
| SRR5643524 | five period of Gastrodia elata | 13.440 | |
| SRR5643525 | five period of Gastrodia elata | 22.210 | |
| SRR5643528 | five period of Gastrodia elata | 79.640 | |
| SRR5643658 | five period of Gastrodia elata | 42.140 | |
| SRR5643659 | five period of Gastrodia elata | 15.710 | |
| SRR5643660 | five period of Gastrodia elata | 12.800 | |
| SRR5643661 | five period of Gastrodia elata | 11.890 | |
| SRR5643662 | five period of Gastrodia elata | 8.400 | |
| SRR5643663 | five period of Gastrodia elata | 10.250 | |
| SRR5643664 | five period of Gastrodia elata | 6.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 66.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 84.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 65.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 45.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 113.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 113.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.74 |
| Juven | Juvenile tuber | 48.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.72 | |
| Mother_Juven | Mother tuber of Juvenile | 25.19 |