Gene detail

Detail information of GWHGAAEX002303/evm.TU.scaffold_12.18

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2760	8.00E-169	Vacuolar sorting protein VPS36
nr	gi\|672174348\|ref\|XP_008807335.1\|	0	PREDICTED: vacuolar protein sorting-associated protein 36 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9FF81\|VPS36_ARATH	2.00E-169	Vacuolar protein sorting-associated protein 36
trEMBL	tr\|M0SBI2\|M0SBI2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P03640_001}
TAIR	AT5G04920	8.00E-169	EAP30/Vps36 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	828634	881518	+

Transcript Sequence
>GWHTAAEX002303 ATTTTTTTTATCGGTTATGCATTTTACAATAAAAAAAAGCAATAGCAATTTTATCCCAGTTCTTTTTCGAGCAGTCTTTGTAATCTTCAGAATGGCCGTCGCCTGGCTGCCGCTGGTCGATCTTACAACCTCCGGCCGACCAGTTCTTTTTCCTGGCGAGGTTGAGCACCTCTTCCTGTCATCAATCGATCTTGAACCCGAAGAAAACCCTACTCTTCCACCTCTTCGTTCTGGTCTCCTCACCCTTACCTCCCATCGCCTTCTGTGGATCCACCACACCTCCCGCATCGCCCACTTCATTCACCTTGATTCAGTCATCCATGTTTTTTCTCCAAAGAAATCTATTAAAAAGATGTTTGCTAGTCCTAGGGTTCGTATCCAGGTTTCCTCGGATGAAAAAATCATCGGCAAGGGAACGTCGGTGGTGATCACTATCGTGATGCGAGGTGGTAAGGGCGATCCGGAATCTTTTATCGGAAAATTGTTGGAGGTTATAAAGTCTAGGCCGTGGGAGATGGAAGAGGTACAAGGGAGGGACGATGTACAGGTGATTGGGATAAATAGTTTAGGAGAGGGAACAAGTAGAGTGAAAACGACTGTGGTTGGTGTTGCCGGTATTCTTAGGAAGGAGCAAGAGATGTGGGAGAGCACGGATAAGAGCTTACAGGATTCTTTCCAGGACCTCAATGCTTTGATGGGTAAAGCTAAAGAGATGGTTGCATTAGCTGAGACAATGAGGCAGAAGTTATTAACTGGTTCAGCTGCTCAAGCTCATGCAAATGATGAAGAGATGGGCTCAAAGCAGGAGATGCAAGATTGGTTACTTAGCATTGGCATTGTATCTCCAGTTACAAAAGAATCTGCTGGTGCTCTCTATCATCAACAATTATCTCGTCAGCTGTCTGATTTCGTGAAATTGCCTCTTGAGAAGTCAGGCGGAATGATTGCACTGATGGATGTCTACTGTCTTTTTAATCGAGCTAGAGGAACTGAATTAATTTCACCGGAAGATCTCTTACAAGCCTGTGGTCTCTGGGAAAAATACGAAGTCCCGGTAATGCTTAGGAAGTTTGATAGTGGAGTAATGGTCATTCAGAGCAAGAGCCACCGTGATGAGGAGATTTTTGCAAGAATCAGCTCTCTAGTTCAAAAGCCTGATGCTCTGAAATTTGGCATTAGCCCCAGTGATGCAGCTTTAGCGTTGGGTATTGCCCCAGCTCTTGCCAAAGAAAACCTGTTGAATGCTGAAAGTAAAGGTCTTTTGTGCAGAGATGTCAGCCCTGACGGTTTCCGCTTCTATGCTAATGTGTTCAAAGAGTTGGAATCAATGGATATTTACTTGGTTAAAGATGAGGGTCTTTACAAGGCTTGGATCTCTGCTTCGTTATTGGCCTCTCTGTATTGACCATTGAGTGGCTGGACAAGAATCATAAGTTGGCCATTTTTTCAGACGAAGAAAGCATGTGAATGGCAGCTATATTCTTTGTTGGAACGACTCTGAGGCTATTTATGATTGGCTCATTTTTAGATGATTGCTGTTTGAAAACCCTCTTGATTTTATTGCTCTTCATAAATTGTCCGTTGCTGTAAACCCTAGTTTTTGCGAGCATGAACTTGAAAATCTTCAGCTCTGTTTATAGTTTCGTCCAATATCTTTGGGCTGAACGCTAAGAGTTGCGCTGGATATCTGCATACAACTTAACGAATAGAAAGTTTGCTGGAAGACAATAATAGCCACTTGATTTTATGGGCTCTAATCTCATTCTCAGAAGTTCATCATTTGCTAGAAAACTTCTCAAAGTCTGTATTCTAGTTGGCATCTTTGACGCTACGTTACTTTAAAGTTTTGCATTTATGTGATTTCCTGTACAAGGAGAAAGGAGTATTTTTTGTTAAGATTTTTTGTTCTTGGCTTGCGTGAGGCTGAGTGGAGCTAGATGACTTCCTCTTCCTCTCCTTTGAATGTTAGATTGTGGGAGAACTTGTTTCCTTTGCTTCCACTAGTGGATTCCAACTAGCTAATACAGTTGTCAGCTGGGCTAGGTTTGATTGATGAAGGGGTCAAGATTTAGAATTGATGCTTTGCTAACTACTTGTTGGGTAAGTACACTTATCCTGGACTCTTTTAGAGGTGATGCTGGCTATTATCCCCTTTGTTTTGGTTGTATAAAATATTTGAATGTGGCGAGAGGACCTTTTTTGGAGCCTCTTTTTTAGTGAAAGATTGAGAACATGCCTTTGCTTATAAATAAGCACTTTCCTTGGTTCTTAATTGAATCCATCTTCCAAGGCTCTTGTTGGTTCTATGGTTTGATGCGGTGCCTTCTTGATTTGCCAGTTGTGTTGGTGTGCCACTTTGTGCACTTGTAACAAATTTTAGAAACACGATCTTTTGCGAGAGTTTGTGTAAATTACACCATATTTGTTCCCTTATATTCTCTATTGATATAAAATGTATGTCTCTCAGAACATAGATT

Network for GWHGAAEX002303

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11605.7	Vps36_ESCRT-II	36	123	5.10E-09
PF04157.15	EAP30	196	419	1.20E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12190	VPS36, EAP45	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding
GO:0043130	Molecular Function	ubiquitin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.940
SRP064423	SRR2545915	Juvenile tuber	11.470
SRP108465	SRR5643513	five period of Gastrodia elata	14.910
	SRR5643514	five period of Gastrodia elata	14.520
	SRR5643515	five period of Gastrodia elata	14.910
	SRR5643524	five period of Gastrodia elata	14.460
	SRR5643525	five period of Gastrodia elata	14.750
	SRR5643528	five period of Gastrodia elata	16.310
	SRR5643658	five period of Gastrodia elata	12.560
	SRR5643659	five period of Gastrodia elata	12.370
	SRR5643660	five period of Gastrodia elata	12.140
	SRR5643661	five period of Gastrodia elata	11.810
	SRR5643662	five period of Gastrodia elata	15.660
	SRR5643663	five period of Gastrodia elata	14.510
	SRR5643664	five period of Gastrodia elata	16.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.870
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.220
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.840
SRP279888	Gastro	Gastrodia elata tuber	17.19
	Juven	Juvenile tuber	20.97
	Mother_Gastro	Mother tuber of Gastrodia elata	13.19
	Mother_Juven	Mother tuber of Juvenile	17.28