Detail information of GWHGAAEX002311/evm.TU.scaffold_12.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743867186|ref|XP_010905250.1|5.12E-75PREDICTED: uncharacterized protein LOC105032494 [Elaeis guineensis]
Swissprottr|P12863|TPIS_MAIZE2.00E-17Triosephosphate isomerase, cytosolic
trEMBLtr|W1PQP9|W1PQP9_AMBTC1.00E-69Uncharacterized protein {ECO:0000313|EMBL:ERN09545.1}
TAIRAT3G051003.00E-61S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000911547461187352+
Transcript Sequence

Network for GWHGAAEX002311

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00121.17TIM4845275.80E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004807Molecular Functiontriose-phosphate isomerase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.990
SRR2545915Juvenile tuber0.740
SRP108465SRR5643513five period of Gastrodia elata1.170
SRR5643514five period of Gastrodia elata0.800
SRR5643515five period of Gastrodia elata0.630
SRR5643524five period of Gastrodia elata1.170
SRR5643525five period of Gastrodia elata1.550
SRR5643528five period of Gastrodia elata0.930
SRR5643658five period of Gastrodia elata1.260
SRR5643659five period of Gastrodia elata1.630
SRR5643660five period of Gastrodia elata0.950
SRR5643661five period of Gastrodia elata1.590
SRR5643662five period of Gastrodia elata0.820
SRR5643663five period of Gastrodia elata1.430
SRR5643664five period of Gastrodia elata0.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.830
SRR6049655Rhizomagastrodiae_C368-T10_good_11.340
SRR6049656Rhizomagastrodiae_C368-T07_good_10.520
SRR6049657Rhizomagastrodiae_C368-T07_good_10.660
SRR6049658Rhizomagastrodiae_C368-T04_good_10.120
SRR6049659Rhizomagastrodiae_C368-T04_good_10.190
SRR6049660Rhizomagastrodiae_C368-T01_good_10.570
SRR6049661Rhizomagastrodiae_C368-T04_good_10.480
SRR6049662Rhizomagastrodiae_C368-T01_good_10.850
SRR6049663Rhizomagastrodiae_C368-T01_good_10.420
SRR6049664Rhizomagastrodiae_C368-T10_good_10.830
SRR6049665Rhizomagastrodiae_C368-T10_good_10.830
SRP279888GastroGastrodia elata tuber 0.61
JuvenJuvenile tuber0.94
Mother_GastroMother tuber of Gastrodia elata 0.66
Mother_JuvenMother tuber of Juvenile 0.86