Gene detail

Detail information of GWHGAAEX002326/evm.TU.scaffold_12.54

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|46447560\|ref\|YP_008925.1\|	2.00E-12	hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila UWE25]
KOG	KOG1947	7.00E-153	Leucine rich repeat proteins, some proteins contain F-box
nr	gi\|743807730\|ref\|XP_010928168.1\|	0	PREDICTED: F-box protein At-B [Elaeis guineensis]
Swissprot	tr\|Q9ZWC6\|ATB_ARATH	2.00E-153	F-box protein At-B
trEMBL	tr\|A0A068UZG0\|A0A068UZG0_COFCA	5.00E-154	Coffea canephora
TAIR	AT1G55590	7.00E-153	RNI-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	2070329	2087549	+

Transcript Sequence
>GWHTAAEX002326 ATGGCAGCAGTCGGTGTCGGTGAGCTGGTGGAGAGGCTGCCGCATGCTCTATTACTCGAGATTCTTTCGATGCTCAACGTGGAGTCTCTCTGTTCGGCTGCCACTGTTTGCAGAACCCTTCGCTCTTCTGCTTCTCAAGTTCTCTCTTCCCTCTCCACTCTCGACCTTTCTGGGCTTACTCCTACAACTCATATTCTAAGAAGAATTATGCGTGTTAGTTGCGGTCTTCGAGGCCTAACCCTTGATTGTAGTCGGTTGGATGACTCTTCAGTCAACCTTTTTGCAAAACAACATCTAGAGAAACTTGTGTTACTGAAATGTAATTACTTCACCGCTTACATATTTCTTGGAATTGGTCAAAACTGCTTAAATTTAAGAGAATTAAGTTTGGAGTTGGTGTATGGTGATGATCCTTATTTTATTCATGACTGCAGCAAAGCTATAGAAAAGATGTTTAAAGGATGCCAGTATTTGGAGTCATTAAGTATAAAGCTTCATACCTTACATCAATTCCATCAGTTTGACACCGTACAGTTCTTTCTTCCACAAACTTTAAAAACATTACTATTGCAACCTGTCTCTTACCGGAAAGCTTCAGAGCTCATATCAGATAGCCTAATTGTTACTATTGATGCAGATATTCGTTCAGCAGTTGATGTTCATAATCTTTCTTTACTGCCTCCATGTCTTATGCTGCAGTCTCTTACCCTTGTTCTTAACATTATTACTGATGAACTTGTTGCAACCATCATGAATTATGTCCCTTATTTATCTGTTCTGTCTCTAGAAGACAATATGTTTGAAGAAAAAACATCTCATCATAATGATTTATCAAACGCTGGCCTTCAGTTATTAAGCTCAAGCAAAAAACTGACACGGCTTTCTCTTTCGCGAAGACGACCCAATTATTTTAAGAGAATTACTGATGTCGGTTTTCTAATCCTTGCTGAAGGCTGTAAAGGACTAGAATCATTAAGGCTTGGAGGATTCTCTAAAGTGACAGATGCTGGTTATATATCCCTTATGCAGTCCTTTAGTAACCTAAAGAGGTTTGAGGTCATCAATAGCTATTTTTTGTCAGATTTGGCATTTCATGATCTGGCTTCTGTGGCAGACTCTCTTGTTGAAGTTGTTCTGATATCCTGCAATCTTCTAACGAGTGAAACTGCGGATTCACTATCATTATGCAAGAACTTGGAGAAGCTGAATCTCAGGGGTTGCAAAAGCATTGCTGATGATGGATTAAATTCAATTTCAATGCTCTGTAATTTGACTTCGCTGGATCTCAGTGCAGCTGATATCACTGATAGTGGTTTGTCAGCCCTTGGCCTGTGCCGCTCTCCAATTGCTAATTTGTATCTACGTGGCTGTAAAAGGATCACTGATGCGGGTTTCAAAAAGCTTTTTAAAATGGATAGTGTTATCTCTAGAACATTGTCAACTCTTGACCTGGGTTACTTGCCTGGGGTATCAGATGAAACATTGGCTCTAATTTCAACTTCTTGTAGGGTAATCACCAGTCTCTGCATTAGACATTGTTTCTTTGTAACTGATGCATCTATGAGGGCCCTAGGGTTGATGCCAGATATGGAAGGAAGAAGGAGATCAATTAAAAGACTCGATCTTTACAATTGCAGTGGGTTGTCAACTGATTCAATTAGATTTTTTTCCCATCCTTACTTTCAAGGCTTGCACTGGCTTGGCTTTGGGGATACAAAATTGCATGGAAAGGTAAGAGGAAGAATAGAGGAGCTTTCGAACGAAAGACCATTGCTAAACATTTGTCTTTATGGCTGTGAAATGGGCTGCATTAATGGCTGGTTTCTCCATTGA

Network for GWHGAAEX002326

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	11	45	5.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.120
SRP064423	SRR2545915	Juvenile tuber	15.090
SRP108465	SRR5643513	five period of Gastrodia elata	4.170
	SRR5643514	five period of Gastrodia elata	2.860
	SRR5643515	five period of Gastrodia elata	3.490
	SRR5643524	five period of Gastrodia elata	2.560
	SRR5643525	five period of Gastrodia elata	2.260
	SRR5643528	five period of Gastrodia elata	1.530
	SRR5643658	five period of Gastrodia elata	1.910
	SRR5643659	five period of Gastrodia elata	6.940
	SRR5643660	five period of Gastrodia elata	6.850
	SRR5643661	five period of Gastrodia elata	5.330
	SRR5643662	five period of Gastrodia elata	5.450
	SRR5643663	five period of Gastrodia elata	6.460
	SRR5643664	five period of Gastrodia elata	6.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.180
SRP279888	Gastro	Gastrodia elata tuber	7.27
	Juven	Juvenile tuber	5.15
	Mother_Gastro	Mother tuber of Gastrodia elata	2.40
	Mother_Juven	Mother tuber of Juvenile	3.44