Gene detail

Detail information of GWHGAAEX002330/evm.TU.scaffold_12.62

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743766059\|ref\|XP_010913257.1\|	4.47E-86	PREDICTED: uncharacterized protein LOC105038998 [Elaeis guineensis]
trEMBL	tr\|M0SVJ5\|M0SVJ5_MUSAM	4.00E-80	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P04160_001}
TAIR	AT5G56250	2.00E-34	hapless 8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	2505800	2510590	+

Transcript Sequence
>GWHTAAEX002330 ATGTTCTCTCTTGTAAACTCTTCAGATCCCCCTTGTTTTTCCACTAAGAAGATTACAGGATCCAGAGCTAATGAGGAGGATTCAGAGAAGCAGTTTACTAGCAATTTCTCCATTAGAGACCACGTCTATGCGTCAAGAAGTAGAAGCATTGGCAAGAGTTGGCCATTTCCTAGCCAGTTATTGCAGCTTTGCATGAAACATGGAGTTCAAAATTTGCTGCCGCCATTTGAGCCGCCGAATTCTGTGAGAACCCAGCATTGCTTCAGTCGATCATCAGCATCATCAGAAGCCGAAATTGTTGTGCCGAATGCCGAGCCTTTTTCAATCGAAAATGCGGACTTGTGCTTGCCTATAGAGGATGTGCATCTAAGGCATTCAGACAAACAGGTAAATGATATTTGTGAAATCGGCTCAACTGTGACAAACCACTGTGATATTGAGAGAAGCCAAAATTTTGAGCACGGGCTTGTGCTGAAGCCAAGACCTATCATCTTTGAAACAATCCAAGCTGACGAAGCATCTGCGGCTTCTTCGGCATCTGATATCATGGCATCAAAGCTTTGCCCTGTGTGTAAGGCGTTTTCTTCCACCTCAAACACAACTCTGAATGCTCATATGGATCAATGCCTTTCTTTGTTGGAGTCTGGCAATACCCTGGCCCAGGACAAATTGCAACAACCAAAGTTCAAGGAGAAGTCTAGGAAGAAGAGGCTGATGGAAGAAATTTATGCGACAGCTCCCAGCTGCACGCTGGAAGAGCTTGATAGGAGGAATGGTTCGACATGGGCGACTGATTTGGCTGTGGTGCTGCCCACTGCTGAAACTAATTTGGAGTCGGGAACTCCCAAATTGTCTCCTTTGTGCAGTAGAGACAATGCTGAAGGAGCGGTTTACGTTGATTCCAATGGAATTAAGCTTCGGATTCTGTCAAAGCTCGATGTTGAGCCGCGATTGCTGTCGAGAGAAGAACTCAATCCAAAGAAGAATACCGAGAGTATTCATGATCAGAGGATCATTCTTATTAAAAAGAAGAAACATTTGAGCACCCCCTTCTCTAAGAAAATGAGGTTTAAATTGAGGAGTAGGAGATTCAGTTCTTTAAATCTATTGAAAAATGAGGTTCAACCAGGCTCGAAAGTGGTGCATCAAGAAGAATCTCATTTAAGGGATGAAGAATCGCCAGTTCAATTAACATGCGAAGCAGACAGAAGTTTTAGTTGTGAATCAGCAGCCACTCTAAAGAACTGGCCTTGCTCAAAGCGCTCAAATCTTCCCAAAAAAGATGGAAAGAAAGATATTGATAAAATATCGGAGGTCCCCATTACGGATTGCCATATGGTAATGCCCGAGGCATGGAAACCGGCATCAGGCAGTCATTCTGCTGCGAAAAGTCACTCTGGAAAACGCTCTCATTTATCAGAATCCAATTCCCTGGAATTTCTATTCAATGCTGTTCAGAACAAGGAGAATCAGGAAAAAAAATTTCGAAGATGGAAATCAGCACCTGACACTCCTACCACCGCAAAAAGCCATTTTGGAAAACTCTCAGAGCTACTGGAATCCAAAGCAGTGGACTGCCCATCCTCTTCTCAGAAAAAGGAGAATCATCAGCAAAGCTTTCAAAGATGGCCATCAGAAAGTACTTCAACTTCTATTCACCTGAGACTGTCGAGAGCGATGGGGTCTTTGGAGTCTTCATTGCCAAGCAGTACTAGTGAAGAATCCTGCAAGGAGAGAAAAAGGAAGTCTCTTGATTCTAAGACAAACAAAAGATCGTCTGAGATTTGTCATCTTCCATTGAAAACCAAAAGGGTGTCAACATTATGCGGCCCGAGTTCTTGCACCGGTAAGCTTCGTAGGGATGGACCATTAGTTGCCTGGAATGGTGATAGTAAGGTGGAAGTGCTATCCTCTGACTTTAATGCAAGACAGCACAGATCTATAGAAGCCATTACCTCAGGATATCACGACGAACATGTTGCGAATAATGTGCACATGGACACCCTTCAAACAAAAGTTTCTGAAATGCAAACTGATCATAAGACTGCTGGTTTGAATAGTTTTAAAACCGGTGATTCTAGTTGCATGATACCTAGTCCATCCGTTTGCTTTGAAATGCTGACAAATATAGCGGCCCGAGAAAACGACATGCCTTTGGCGCTAGCTTTTCTTGACAAGCAAGGCAGGCCGGCGTTAGACAATTTGGAAAAGAGTCATGGAGATCTATGGATTGATATTACAGGGAAAAATTCCACAAAAGATCCTTTAATTCCAACTCAACAGAAGATCGCTGCTCATTTTAGAGAGGCATCTGCATCTCCTTCTTCAACTGCAACAACTGTCCCTTCCCCATCTCCAAGAGAGTGCCCTTCTCAATTAGCTTCTGTTTTTTCCACTGTTCAAAGGAAGCCAAGTTTTCCCTTGCCATTGAAGGATGCTCAAGGAATAATAGATATAGAGAGAAATAAGCAAGTTGATATGGATGCAACTATGAAGAAACCTCACCAACTCTCAGGCTATCATCCCTGCTGCTGCTCCTGGCAAAGTGTCTTTGCTGGAAGCATGGCAGATGCAAAGCCACGACCTCTGCCTAATCTTCTCATCAGACCAAACCTCCCCTCCTTTTATGCTCACTCCAATTTTCCGTCTGACATGCCAAATGCTCCCTCCCTCGAATCACCTACCGAATCAGTTTTGACAAAGGCTTGCAGTGATGTTGGTTCAATAAGCCCGCCGCCATGTGGAACACCGTCTCAGTCGGCCTCCTCCAATTCCATCCTTAGATTGATGGGAAAGGATCTGATGGTGGTGAACAATGAAGAATCTTCTCAGCTTCCAAAGGTTAATTCCCCGGTTAAAGATAGCAGCTTTAATGCTCAGGCCCCACCTTCACCACTGGGTTTTACTTCATATGCTAGTTTTATTAGTGATGCCACCTCTTTGGCTGTTCATGCTCAGTCTCCACCAATGACCGGCTTACATGGCTTTCAACAAAAAATTGCGAATCACAAAGGCTACAAGGCTGAGGAGGTGATCGTTATCGATGACTCGGAAAGGCCATTCAACTACTTGCAGCACAACAGCCCTCTCTTCTCTCGAAATAATGGTATTCTGCAACCTGTTATTCCAATCAAGCATGGAAGCACTATTCCAGCCCCACATTTTCCATTGCCTTTTGTGTTCCGATCTCCTTCTACAGCTCACTTTAATTCTCAGTTCTATTACCCACAATCCTTGAGGTAA

Network for GWHGAAEX002330

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX002330
MFSLVNSSDPPCFSTKKITGSRANEEDSEKQFTSNFSIRDHVYASRSRSIGKSWPFPSQLLQLCMKHGVQNLLPPFEPPNSVRTQHCFSRSSASSEAEIVVPNAEPFSIENADLCLPIEDVHLRHSDKQVNDICEIGSTVTNHCDIERSQNFEHGLVLKPRPIIFETIQADEASAASSASDIMASKLCPVCKAFSSTSNTTLNAHMDQCLSLLESGNTLAQDKLQQPKFKEKSRKKRLMEEIYATAPSCTLEELDRRNGSTWATDLAVVLPTAETNLESGTPKLSPLCSRDNAEGAVYVDSNGIKLRILSKLDVEPRLLSREELNPKKNTESIHDQRIILIKKKKHLSTPFSKKMRFKLRSRRFSSLNLLKNEVQPGSKVVHQEESHLRDEESPVQLTCEADRSFSCESAATLKNWPCSKRSNLPKKDGKKDIDKISEVPITDCHMVMPEAWKPASGSHSAAKSHSGKRSHLSESNSLEFLFNAVQNKENQEKKFRRWKSAPDTPTTAKSHFGKLSELLESKAVDCPSSSQKKENHQQSFQRWPSESTSTSIHLRLSRAMGSLESSLPSSTSEESCKERKRKSLDSKTNKRSSEICHLPLKTKRVSTLCGPSSCTGKLRRDGPLVAWNGDSKVEVLSSDFNARQHRSIEAITSGYHDEHVANNVHMDTLQTKVSEMQTDHKTAGLNSFKTGDSSCMIPSPSVCFEMLTNIAARENDMPLALAFLDKQGRPALDNLEKSHGDLWIDITGKNSTKDPLIPTQQKIAAHFREASASPSSTATTVPSPSPRECPSQLASVFSTVQRKPSFPLPLKDAQGIIDIERNKQVDMDATMKKPHQLSGYHPCCCSWQSVFAGSMADAKPRPLPNLLIRPNLPSFYAHSNFPSDMPNAPSLESPTESVLTKACSDVGSISPPPCGTPSQSASSNSILRLMGKDLMVVNNEESSQLPKVNSPVKDSSFNAQAPPSPLGFTSYASFISDATSLAVHAQSPPMTGLHGFQQKIANHKGYKAEEVIVIDDSERPFNYLQHNSPLFSRNNGILQPVIPIKHGSTIPAPHFPLPFVFRSPSTAHFNSQFYYPQSLR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.620
SRP064423	SRR2545915	Juvenile tuber	43.560
SRP108465	SRR5643513	five period of Gastrodia elata	31.270
	SRR5643514	five period of Gastrodia elata	30.450
	SRR5643515	five period of Gastrodia elata	31.330
	SRR5643524	five period of Gastrodia elata	32.910
	SRR5643525	five period of Gastrodia elata	83.340
	SRR5643528	five period of Gastrodia elata	78.010
	SRR5643658	five period of Gastrodia elata	71.780
	SRR5643659	five period of Gastrodia elata	23.360
	SRR5643660	five period of Gastrodia elata	26.770
	SRR5643661	five period of Gastrodia elata	24.340
	SRR5643662	five period of Gastrodia elata	28.650
	SRR5643663	five period of Gastrodia elata	25.910
	SRR5643664	five period of Gastrodia elata	28.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.090
SRP279888	Gastro	Gastrodia elata tuber	29.68
	Juven	Juvenile tuber	30.17
	Mother_Gastro	Mother tuber of Gastrodia elata	98.83
	Mother_Juven	Mother tuber of Juvenile	94.37