Detail information of GWHGAAEX002338/evm.TU.scaffold_12.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297527594|ref|YP_003669618.1| | 4.00E-11 | DNA-directed RNA polymerase [Staphylothermus hellenicus DSM 12710] |
| KOG | KOG3297 | 9.00E-65 | DNA-directed RNA polymerase subunit E' |
| nr | gi|743775230|ref|XP_010917993.1| | 1.79E-87 | PREDICTED: DNA-directed RNA polymerase III subunit RPC8 isoform X3 [Elaeis guineensis] |
| trEMBL | tr|M0RZD7|M0RZD7_MUSAM | 8.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P12790_001} |
| TAIR | AT1G06790 | 9.00E-65 | RNA polymerase Rpb7 N-terminal domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 3221914 | 3232749 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002338
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03876.16 | SHS2_Rpb7-N | 9 | 77 | 9.80E-15 |
| PF08292.11 | RNA_pol_Rbc25 | 79 | 186 | 9.80E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03022 | RPC8, POLR3H | RNA polymerase | map03020 |
| Cytosolic DNA-sensing pathway | map04623 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.680 |
| SRR2545915 | Juvenile tuber | 10.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.250 |
| SRR5643514 | five period of Gastrodia elata | 6.770 | |
| SRR5643515 | five period of Gastrodia elata | 6.490 | |
| SRR5643524 | five period of Gastrodia elata | 7.070 | |
| SRR5643525 | five period of Gastrodia elata | 9.200 | |
| SRR5643528 | five period of Gastrodia elata | 7.760 | |
| SRR5643658 | five period of Gastrodia elata | 7.540 | |
| SRR5643659 | five period of Gastrodia elata | 6.970 | |
| SRR5643660 | five period of Gastrodia elata | 8.120 | |
| SRR5643661 | five period of Gastrodia elata | 7.020 | |
| SRR5643662 | five period of Gastrodia elata | 6.780 | |
| SRR5643663 | five period of Gastrodia elata | 7.970 | |
| SRR5643664 | five period of Gastrodia elata | 7.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.46 |
| Juven | Juvenile tuber | 9.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.11 | |
| Mother_Juven | Mother tuber of Juvenile | 8.46 |