Detail information of GWHGAAEX002341/evm.TU.scaffold_12.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307152491|ref|YP_003887875.1| | 4.00E-32 | WD40 repeat-containing protein [Cyanothece sp. PCC 7822] |
| KOG | KOG1539 | 0 | WD repeat protein |
| nr | gi|695012140|ref|XP_009392814.1| | 0 | PREDICTED: WD repeat-containing protein 36 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8H0T9|KTNB1_ARATH | 4.00E-11 | Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022} |
| trEMBL | tr|K3XV61|K3XV61_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si005818m} |
| TAIR | AT4G04940 | 0 | transducin family protein / WD-40 repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 3402507 | 3492803 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002341
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12894.6 | ANAPC4_WD40 | 190 | 277 | 1.20E-05 |
| PF00400.31 | WD40 | 550 | 585 | 2.80E-11 |
| PF04192.11 | Utp21 | 680 | 909 | 4.70E-59 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14554 | UTP21, WDR36 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006364 | Biological Process | rRNA processing |
| GO:0005515 | Molecular Function | protein binding |
| GO:0032040 | Cellular Component | small-subunit processome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 51.580 |
| SRR2545915 | Juvenile tuber | 44.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.780 |
| SRR5643514 | five period of Gastrodia elata | 22.790 | |
| SRR5643515 | five period of Gastrodia elata | 22.260 | |
| SRR5643524 | five period of Gastrodia elata | 23.500 | |
| SRR5643525 | five period of Gastrodia elata | 21.730 | |
| SRR5643528 | five period of Gastrodia elata | 26.930 | |
| SRR5643658 | five period of Gastrodia elata | 23.390 | |
| SRR5643659 | five period of Gastrodia elata | 24.000 | |
| SRR5643660 | five period of Gastrodia elata | 24.650 | |
| SRR5643661 | five period of Gastrodia elata | 18.410 | |
| SRR5643662 | five period of Gastrodia elata | 22.720 | |
| SRR5643663 | five period of Gastrodia elata | 24.640 | |
| SRR5643664 | five period of Gastrodia elata | 22.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 48.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 40.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.09 |
| Juven | Juvenile tuber | 34.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.46 | |
| Mother_Juven | Mother tuber of Juvenile | 40.29 |