Detail information of GWHGAAEX002342/evm.TU.scaffold_12.79


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG10308.00E-71Predicted Ca2+-dependent phospholipid-binding protein
nrgi|672170939|ref|XP_008805539.1|2.83E-168PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q9FVJ3|AGD12_ARATH1.00E-145ADP-ribosylation factor GTPase-activating protein AGD12
trEMBLtr|M0U447|M0U447_MUSAM5.00E-159Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P27900_001}
TAIRAT4G21160_28.00E-71Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000935312833565965+
Transcript Sequence

Network for GWHGAAEX002342

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01412.17ArfGap441583.50E-35
PF00168.29C21992865.80E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12486SMAP Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0005096Molecular FunctionGTPase activator activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms42.460
SRR2545915Juvenile tuber44.330
SRP108465SRR5643513five period of Gastrodia elata20.110
SRR5643514five period of Gastrodia elata22.910
SRR5643515five period of Gastrodia elata27.800
SRR5643524five period of Gastrodia elata31.490
SRR5643525five period of Gastrodia elata34.800
SRR5643528five period of Gastrodia elata52.470
SRR5643658five period of Gastrodia elata33.350
SRR5643659five period of Gastrodia elata18.300
SRR5643660five period of Gastrodia elata18.650
SRR5643661five period of Gastrodia elata22.110
SRR5643662five period of Gastrodia elata22.640
SRR5643663five period of Gastrodia elata17.490
SRR5643664five period of Gastrodia elata16.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.530
SRR6049655Rhizomagastrodiae_C368-T10_good_113.120
SRR6049656Rhizomagastrodiae_C368-T07_good_116.600
SRR6049657Rhizomagastrodiae_C368-T07_good_119.560
SRR6049658Rhizomagastrodiae_C368-T04_good_118.040
SRR6049659Rhizomagastrodiae_C368-T04_good_122.770
SRR6049660Rhizomagastrodiae_C368-T01_good_121.110
SRR6049661Rhizomagastrodiae_C368-T04_good_118.280
SRR6049662Rhizomagastrodiae_C368-T01_good_120.170
SRR6049663Rhizomagastrodiae_C368-T01_good_122.500
SRR6049664Rhizomagastrodiae_C368-T10_good_116.210
SRR6049665Rhizomagastrodiae_C368-T10_good_116.210
SRP279888GastroGastrodia elata tuber 21.19
JuvenJuvenile tuber19.69
Mother_GastroMother tuber of Gastrodia elata 70.67
Mother_JuvenMother tuber of Juvenile 55.00