Gene detail

Detail information of GWHGAAEX002344/evm.TU.scaffold_12.82

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1851	Uncharacterized conserved protein
nr	gi\|743807151\|ref\|XP_010928001.1\|	PREDICTED: proteasome activator subunit 4-like [Elaeis guineensis]
Swissprot	tr\|F4JC97\|PSME4_ARATH	Proteasome activator subunit 4
trEMBL	tr\|D7UAP4\|D7UAP4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39809.3}
TAIR	AT3G13330	proteasome activating protein 200

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000009	3724153	3770627	-

Transcript Sequence
>GWHTAAEX002344 ATGCATCTCTACAACGCTTGGCTTCCTCCGCCTGTAGCCGAGGAGACAAAAAGGGAGTCGGAATCGTTCGCTGTCGTCGTGAGATCTGTAAAGGAGGCTTGGCGGCCGGAGGATCCTGAATCTATTTACTCAACTCTCAAGTGGATTTCCGTCCTCGACCTCTTTATTAAAGCTAAGACTGAAGTTTTTTTGGAAGATGTTAAAGAACTGGTTGAATGTGGTGTAGATATTTTCAATGCATCGCAGAACAAGCTCTACTCTCAGGTTAGATGGGGAAGCATATTAGTCAAGTTCTTGAAGAAGCACGGCAAGAAGATATCAGTCAAAATCCACTGGAGGCCTTTATATGATACTTTGATGATGACACACTTTAAAAGAAATACAGGCCCAGAGGGATGGAGATTAAGGCAACACCATTTTGAGACTGTTACAACCCTTATTCGTTCTTGCCGGAAGTTCTTCCCTGCTGGATCAGATTCTGAAATATGGGCAGAATTTAGTCCTTTTATGGAAAACCCGTGGCACAATTCATCATTTGAAGGTTGTGGTTTTTTAAGGCTCTTCCTAACTACAAACTTGGAGAATGAAGATTTCTGCACTAGTTGCCAGATCAAAGAGTTCCTCGACCATTGGAACTCCATTCCAAATTGCCAATTTTGGGATATTCAGTGGGCTTCCATTCTTGCACGTTGCATAAAGAATTGCAAGTCAATTGATTGGGAATGCTTCTTGCCTACACTATTTACCCGGTATCTAAATATGTTCGAGGTTCCAGTATCAGCTGGAAATGGAGGCTATCCTTTCCCTCTTGAGGTTCCTAGAAACACAAGATTTCTATTTTCCAGTAAAACTGGCACTCCTGCCAAAGCTATAGCAAAATCAATTGTTTTTCTTTTAAAACCTGGTAGTTTGGCACACGAGCATTTCGAGAAATTGGCCTGTCTTCTGGAACAGTATTACCATCCTTCAAATGGAGGCCGATGGACTTACTCCTTGGAGCGCTTGTTGAGATACTTGGTAATTAACTTTCAAAAACGCCTTCAGCAAGAGCAACTGTACGGTAAGGATGACAAATGGGCAGACTTTTCTTTAGGAAAATCAGAAAGATTTTCTTTTGTCAAAGTGATGCTGAAATTAATTGATCGTGGTCAATATAGCAAAACCGAAACTCTTTCAGAAACAGTTGCAGTTTCAACTTCAGTTTTAGCATACGTGGAGCCTTCTTTGGTTCTTCCATTCATTGCATCTAGATTCCAGTTGGCCTTGGAGACAATGACTGCCACCCACCAGTTGAAAACTGCTGTTACATCAGTGGCTTATGTTGGTCGTGCTCTCTTTCTTAATTCTTATCTGGCCATTCTCCAAAATGAGGATTTACATGCAGCTGATTCTTTCATGGATGTTTTAGCAATATCCTTATCTAATGCATTGCTTGGAATGGATGCCAATGATCCTCCAAAGACGTTAGCAACTATGCAGTTAATTGGTTCTATATTTTCTAATTTAACTGTAGTAGGTGATAATGAAGATGGCCCGTCATTCCTCCAAAGCTTTGCTTTATCAGAATGGCTGGATGAGTTTTTTTGTCGCTTATTCTCTCTCCTTCAACATCTAGAACCATCAAGTGTCATGAATGAGGGCGTGCAGTCTTCTCTAACTTCAGGGACTTTTCTTGTTGAGGACACTCCTTATTACTTCTGTATGCTTGAAGTTCTGCTAGGAAAACTTTCTAAACCATTATTTAATCAGGCATTGAAGAAGATTTCCAGATTTGTGAATACAAATATTCTTCCTGGTGCTACTGCAGAAATTGGGCTTCTTTGTTGTGCTTGTGTACATTCTAGCCCAGAAGAGTCATCTGTTAACCTTATCAAACCACTGCTGCAGTCAGTAACCGGTTCTTTACAAGGGACTCCTACTTATGATTTTGGCAGAAATGATGCAACTTTTTCAACGAAGGCTACTCTTTCTCCCGCTCTAGAAACTGCAGTAGAGTACCATTTAAAAGTGCTAGCTATTGCCATCAGTTATGCAGGCCCTCAGTTACTATATTATAAAGATGAACTGAAAGAAGTAATTTCTTCTGCATTCCAGGCTCCTTCTTGGAAGGTCAATGGAGCTGGTGATCATGTTCTTAGGTCTCTCCTTGGAAGCTTGGTTCTTTATTATCCAGTTGAACAGTATAAGTCAATGCCATTTCAGCTTGGACCTTCCATTTTAGAAGAGTGGGGTTGCTCAAAGAATGAAAATGACAACTTTCTCCCAAAGTGGCACATCTCTGGAAAAGAAGAACTTTCATTTGCAAATGAGCTATTGGATTTGCATTTTCAAGCTGCTCTAGATGATCTTCTTGGAATATGTCAGACAAAAACTCATGTAGATGCAGGGAATGAGAAGGAACACTTGAAAGTAACACTGTTGCGCATATACTCATCATTGCATGGTGTTATGACATGCTTGCCTGAGATGCGTCCAGCTTCTGGAAGCAGAACTACTACAGATCGGAATTTCAATATATTTTTTATTGCTGGGGCAGTTGGTTCTCAGATTGGTAGTTCAGAACTAAGGGAAAGGGCTGCTGAACAAATACATATTGCTTGCAGATACTTGCTAAAAGAGAGATCAGACGATAGCATTCTATTAATACTTATCATTCGTATAATCCATGCATTGGTTAATTATGGAAGCTTGGAGTATGGAGATTGGTTAAATCACATTCAGGCTTGGAAATTGGAATCTTCTTCAATAATTGAACCACCATGTAATTTCATCACTTCTTCCCATGCACATGGAAAGAGAAGGCCCAGGTGGGCCCTGATTGACAAGGCGTACATGCATAATACATGGAGATCTTCACAGTTCTCATATCATAAATTTCGTGCTGATGCTACTTTGTCTCCGTCAGAACAAATGGTTCCTCTGGTGTATGATCTCATGGAACTCTCTTTGCACAACTATGAAACAGTTCGTTCGCATGCTGCGAGAACTCTAGCAAAGGTGATCAAACGCTGGCCACCATTCATGGCTAAATCCATTTACGTAATTACTCAGCATCTGTCTAATCCAAAAACTCCGGAACACGTGGTGTTAGGCTCTTGTGCAATTCTTTCCGTGAAAACTGTTATAAGGCATTTGACTACAGACGCATCATCCTTCGCTTCATTTATCACAGGTCTTCTGGCAAGCTCCCATCATGAATCGTTGAAAGCTCAGAAAGCTATTACTGAGATGTTTGTTAAATACAATATTCATTTCTCTGGCATACCAAAGAGCATCTTCAAGAACATGAAAAATCTAAGTGATGCAGCTGATTTTGAAGATTTGGTTTCTAAGATCACTTCTTTGAGCTTTGACACAGCCAGCACACACTGGAGATACAATCTGATGGCAAATAGAGTACTACTCCTTTTGAGTTTATCATATCGAAATTATTCAAGCGTGTCTGAAAAAATTCTCAGTGAAACTGCAGGACATTTCTTAAGAAATTTGAAAAGTCAGCTTCCTCAGTCAAGGATGCTTGCAGTCTCTGCATTAAACTCTTTATTGCAGGGTGCTCACAAAGTTAACTGTCAAGAACTTCGGCTTCCCCTTAACAATCATAGAGAAAATATGAACCCTTATGCTGGAATATTGAGACAAATACTGGAGGAGGAGAATTTCTTCAGTGAAACGCTCGACTGTCTTTCCCATGTTCATATTATATCTGACAGCGATAATTCTGCATCCAAAGGAAGTCATGGGGCATCATCTTTTCAAAGTGTGACTGACAAGGCGATCACTTTTTTTTACTTCGATTTCTCAGCATCTTGGCCACGCACTCCTAATTGGATGTCATCAGTTGGAGGTGATACATTCTATTCTAGCTTTGCACGTATTTTTAAACGATTGGCCCAAGAATGTGGTACACCAGTTCTTCATGCAATTCATATGGTTCTTGAAGAGTTTACTGGTTCAAACGAGAGAGCAAAACAGTGTGTTGCTGCTGAAGCCCTGGCTGGTATACTACATTCTGATATTATTGGTCTCTCAGAAGCATGGGACAGTTGGATAATGTCTCAGCTGGAGAAGCTTATCATAGCACCAGCGGTAGATTCAATACCTGAGTGGGCAGCTTGCATTCGTTATGCTGTTACGGGGAAAGGAAAGTATGGTACACGGGTCCCTCTTCTCAGGCAAAAAATTTTAAACTGTTTAGCAAAGGATTTACCGCAGACAGTGACAAGCAACATTGTAGCCAAGAGGTTTTCTTTCCTTGCTGTAGCACTAGTTGAAATGTCTCCACAAAGAATGCCCGCTGAAGAATTGGAGTTCCTTGGCAAACTTTGGGCGGAGTTATTAGATAACATGAGCCACTCATCTGCCCAAGTGAGGGAAGCAATTGGTGTTATCCTTTCTATTCTATTTTCAAACCTCAGGCTTTTTACCGCATGCATTGGTAAGGATCCAAAAATAGTTGAAGGCAGTGTCATGATCAAGTCATTGCAAAGTGAAGATTGGACTAAACTCTTGACAGAAAGAGCCTCTGAATCTGCAATTAATATACAGAGTTCAAGCCAGTTAGAAAACATGGAAACATCATATGATCTATATGAAAATGGCTTCTCAAACAATGAAGCTAAAGCTGATATTAGGAGAATGGAAATGCTGTTCCATTTCATCATCTCATCTTTGAAGTCTGGTAGATCATCAGTTTTATTGGACGTAGTTGTTGGACTTCTGTATCCCATCATTTCTTTGCAGGAAACATCTCATAAAGATTTATCTATGTTAGCAAAGGCAGCTTTTGAATTATTGAAGTGGAAAATACTGCCTCGTCCATATCTTGAAAATTCTGTTCCTGTGATCCTTTCTTCTGTCAATGATCTTAATTGGCGAACTAGATCAACATCCTTGTCATATCTCCGTACGTTCATGTACAGGCACACATTTTTACTTTCACTTTCAGAGAAAAAACAAATCTGGAACAGCATTGAGAAGCTCCTTGTTGATAACCAAGTAAGGGTGCATGCCGCAGGGGCTCTTGCAAGCTTAATGAAGGGTGGAGATGAAGAGCTTTCTAGTGTTTTTAGAAATCGTGCATATTCAGAAGCACAATCAATTATTAGCAAACGCAAGCAAAGAAAACCAGGAGTTGGTCAATCTATTGCTTCTATACATGGCGCTGTTCTTGCACTAGCTGCTTCCGTGCTATCAGCTCCTTATGACATTCCCAGCTGGTTGCCAGATCATGTAACATTACTGGCCCGATTCATAACAGAGCCCTCTCCCATCCGATCCACCGTTACAAAAGCCGTCGCAGAGTTTAGGCGAACTCATGCGGATACTTGGAACATTCAGAAGGATTCATTCACTGAAGAACAATTGGAGGCAAGTTCCGGCCATGATTCTACTACCAATGTTTATTAA

Network for GWHGAAEX002344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16507.4	BLM10_mid	310	502	8.80E-29
PF16507.4	BLM10_mid	519	816	8.80E-22
PF11919.7	DUF3437	1717	1794	4.80E-25

Protein Sequence

>GWHPAAEX002344
MHLYNAWLPPPVAEETKRESESFAVVVRSVKEAWRPEDPESIYSTLKWISVLDLFIKAKTEVFLEDVKELVECGVDIFNASQNKLYSQVRWGSILVKFLKKHGKKISVKIHWRPLYDTLMMTHFKRNTGPEGWRLRQHHFETVTTLIRSCRKFFPAGSDSEIWAEFSPFMENPWHNSSFEGCGFLRLFLTTNLENEDFCTSCQIKEFLDHWNSIPNCQFWDIQWASILARCIKNCKSIDWECFLPTLFTRYLNMFEVPVSAGNGGYPFPLEVPRNTRFLFSSKTGTPAKAIAKSIVFLLKPGSLAHEHFEKLACLLEQYYHPSNGGRWTYSLERLLRYLVINFQKRLQQEQLYGKDDKWADFSLGKSERFSFVKVMLKLIDRGQYSKTETLSETVAVSTSVLAYVEPSLVLPFIASRFQLALETMTATHQLKTAVTSVAYVGRALFLNSYLAILQNEDLHAADSFMDVLAISLSNALLGMDANDPPKTLATMQLIGSIFSNLTVVGDNEDGPSFLQSFALSEWLDEFFCRLFSLLQHLEPSSVMNEGVQSSLTSGTFLVEDTPYYFCMLEVLLGKLSKPLFNQALKKISRFVNTNILPGATAEIGLLCCACVHSSPEESSVNLIKPLLQSVTGSLQGTPTYDFGRNDATFSTKATLSPALETAVEYHLKVLAIAISYAGPQLLYYKDELKEVISSAFQAPSWKVNGAGDHVLRSLLGSLVLYYPVEQYKSMPFQLGPSILEEWGCSKNENDNFLPKWHISGKEELSFANELLDLHFQAALDDLLGICQTKTHVDAGNEKEHLKVTLLRIYSSLHGVMTCLPEMRPASGSRTTTDRNFNIFFIAGAVGSQIGSSELRERAAEQIHIACRYLLKERSDDSILLILIIRIIHALVNYGSLEYGDWLNHIQAWKLESSSIIEPPCNFITSSHAHGKRRPRWALIDKAYMHNTWRSSQFSYHKFRADATLSPSEQMVPLVYDLMELSLHNYETVRSHAARTLAKVIKRWPPFMAKSIYVITQHLSNPKTPEHVVLGSCAILSVKTVIRHLTTDASSFASFITGLLASSHHESLKAQKAITEMFVKYNIHFSGIPKSIFKNMKNLSDAADFEDLVSKITSLSFDTASTHWRYNLMANRVLLLLSLSYRNYSSVSEKILSETAGHFLRNLKSQLPQSRMLAVSALNSLLQGAHKVNCQELRLPLNNHRENMNPYAGILRQILEEENFFSETLDCLSHVHIISDSDNSASKGSHGASSFQSVTDKAITFFYFDFSASWPRTPNWMSSVGGDTFYSSFARIFKRLAQECGTPVLHAIHMVLEEFTGSNERAKQCVAAEALAGILHSDIIGLSEAWDSWIMSQLEKLIIAPAVDSIPEWAACIRYAVTGKGKYGTRVPLLRQKILNCLAKDLPQTVTSNIVAKRFSFLAVALVEMSPQRMPAEELEFLGKLWAELLDNMSHSSAQVREAIGVILSILFSNLRLFTACIGKDPKIVEGSVMIKSLQSEDWTKLLTERASESAINIQSSSQLENMETSYDLYENGFSNNEAKADIRRMEMLFHFIISSLKSGRSSVLLDVVVGLLYPIISLQETSHKDLSMLAKAAFELLKWKILPRPYLENSVPVILSSVNDLNWRTRSTSLSYLRTFMYRHTFLLSLSEKKQIWNSIEKLLVDNQVRVHAAGALASLMKGGDEELSSVFRNRAYSEAQSIISKRKQRKPGVGQSIASIHGAVLALAASVLSAPYDIPSWLPDHVTLLARFITEPSPIRSTVTKAVAEFRRTHADTWNIQKDSFTEEQLEASSGHDSTTNVY

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06699	PSME4	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.210
SRP064423	SRR2545915	Juvenile tuber	48.930
SRP108465	SRR5643513	five period of Gastrodia elata	26.270
	SRR5643514	five period of Gastrodia elata	26.120
	SRR5643515	five period of Gastrodia elata	25.670
	SRR5643524	five period of Gastrodia elata	28.070
	SRR5643525	five period of Gastrodia elata	23.240
	SRR5643528	five period of Gastrodia elata	24.120
	SRR5643658	five period of Gastrodia elata	30.330
	SRR5643659	five period of Gastrodia elata	27.350
	SRR5643660	five period of Gastrodia elata	31.600
	SRR5643661	five period of Gastrodia elata	25.610
	SRR5643662	five period of Gastrodia elata	27.610
	SRR5643663	five period of Gastrodia elata	29.210
	SRR5643664	five period of Gastrodia elata	29.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.240
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.170
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.170
SRP279888	Gastro	Gastrodia elata tuber	35.18
	Juven	Juvenile tuber	53.09
	Mother_Gastro	Mother tuber of Gastrodia elata	32.53
	Mother_Juven	Mother tuber of Juvenile	48.93