Detail information of GWHGAAEX002347/evm.TU.scaffold_12.85


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|83310892|ref|YP_421156.1|1.00E-170N-acetyl-gamma-glutamyl-phosphate reductase [Magnetospirillum magneticum AMB-1]
KOGKOG43540N-acetyl-gamma-glutamyl-phosphate reductase
nrgi|720052383|ref|XP_010272394.1|0PREDICTED: probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic [Nelumbo nucifera]
Swissprottr|Q93Z70|ARGC_ARATH0Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic (Precursor)
trEMBLtr|M0RM82|M0RM82_MUSAM0N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|RuleBase:RU004038}
TAIRAT2G199400oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000938969383958616-
Transcript Sequence

Network for GWHGAAEX002347

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01118.23Semialdhyde_dh571931.10E-28
PF02774.17Semialdhyde_dhC2113692.60E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00145argC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Arginine biosynthesismap00220

Gene Ontology

GO term OntologyName
GO:0006526Biological Processarginine biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0008652Biological Processcellular amino acid biosynthetic process
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0003942Molecular FunctionN-acetyl-gamma-glutamyl-phosphate reductase activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0051287Molecular FunctionNAD binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.270
SRR2545915Juvenile tuber33.140
SRP108465SRR5643513five period of Gastrodia elata22.700
SRR5643514five period of Gastrodia elata26.280
SRR5643515five period of Gastrodia elata24.810
SRR5643524five period of Gastrodia elata22.300
SRR5643525five period of Gastrodia elata26.810
SRR5643528five period of Gastrodia elata20.770
SRR5643658five period of Gastrodia elata24.960
SRR5643659five period of Gastrodia elata24.550
SRR5643660five period of Gastrodia elata23.440
SRR5643661five period of Gastrodia elata24.230
SRR5643662five period of Gastrodia elata25.230
SRR5643663five period of Gastrodia elata21.970
SRR5643664five period of Gastrodia elata23.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.490
SRR6049655Rhizomagastrodiae_C368-T10_good_119.570
SRR6049656Rhizomagastrodiae_C368-T07_good_119.030
SRR6049657Rhizomagastrodiae_C368-T07_good_120.600
SRR6049658Rhizomagastrodiae_C368-T04_good_116.870
SRR6049659Rhizomagastrodiae_C368-T04_good_121.850
SRR6049660Rhizomagastrodiae_C368-T01_good_118.640
SRR6049661Rhizomagastrodiae_C368-T04_good_117.730
SRR6049662Rhizomagastrodiae_C368-T01_good_119.810
SRR6049663Rhizomagastrodiae_C368-T01_good_114.370
SRR6049664Rhizomagastrodiae_C368-T10_good_121.420
SRR6049665Rhizomagastrodiae_C368-T10_good_121.420
SRP279888GastroGastrodia elata tuber 23.64
JuvenJuvenile tuber37.31
Mother_GastroMother tuber of Gastrodia elata 26.82
Mother_JuvenMother tuber of Juvenile 31.36