Detail information of GWHGAAEX002348/evm.TU.scaffold_12.86


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189502133|ref|YP_001957850.1|2.00E-20hypothetical protein Aasi_0738 [Candidatus Amoebophilus asiaticus 5a2]
nrgi|672122410|ref|XP_008784535.1|0PREDICTED: E3 ubiquitin-protein ligase XB3-like [Phoenix dactylifera]
Swissprottr|Q94B55|XB31_ARATH3.00E-171Putative E3 ubiquitin-protein ligase XBAT31
trEMBLtr|W9SIN1|W9SIN1_9ROSA0Putative E3 ubiquitin-protein ligase XBAT31 {ECO:0000313|EMBL:EXC10636.1}
TAIRAT2G288401.00E-165XB3 ortholog 1 in Arabidopsis thaliana

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000939894503993459-
Transcript Sequence

Network for GWHGAAEX002348

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13637.5Ank_4841355.10E-11
PF00023.29Ank1611912.40E-05
PF00023.29Ank1982286.90E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms151.160
SRR2545915Juvenile tuber333.620
SRP108465SRR5643513five period of Gastrodia elata77.830
SRR5643514five period of Gastrodia elata97.620
SRR5643515five period of Gastrodia elata78.520
SRR5643524five period of Gastrodia elata72.770
SRR5643525five period of Gastrodia elata34.120
SRR5643528five period of Gastrodia elata22.550
SRR5643658five period of Gastrodia elata38.000
SRR5643659five period of Gastrodia elata201.410
SRR5643660five period of Gastrodia elata187.180
SRR5643661five period of Gastrodia elata252.360
SRR5643662five period of Gastrodia elata131.360
SRR5643663five period of Gastrodia elata188.560
SRR5643664five period of Gastrodia elata170.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1237.480
SRR6049655Rhizomagastrodiae_C368-T10_good_1147.670
SRR6049656Rhizomagastrodiae_C368-T07_good_1211.530
SRR6049657Rhizomagastrodiae_C368-T07_good_1265.420
SRR6049658Rhizomagastrodiae_C368-T04_good_1140.220
SRR6049659Rhizomagastrodiae_C368-T04_good_1112.970
SRR6049660Rhizomagastrodiae_C368-T01_good_1164.080
SRR6049661Rhizomagastrodiae_C368-T04_good_1164.630
SRR6049662Rhizomagastrodiae_C368-T01_good_1127.780
SRR6049663Rhizomagastrodiae_C368-T01_good_1102.950
SRR6049664Rhizomagastrodiae_C368-T10_good_186.980
SRR6049665Rhizomagastrodiae_C368-T10_good_186.980
SRP279888GastroGastrodia elata tuber 118.59
JuvenJuvenile tuber131.49
Mother_GastroMother tuber of Gastrodia elata 13.58
Mother_JuvenMother tuber of Juvenile 42.75