Detail information of GWHGAAEX002355/evm.TU.scaffold_12.110
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|194334049|ref|YP_002015909.1| | 2.00E-12 | RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271] |
| KOG | KOG0533 | 2.00E-64 | RRM motif-containing protein |
| nr | gi|743874385|ref|XP_010907063.1| | 2.38E-81 | PREDICTED: THO complex subunit 4A-like [Elaeis guineensis] |
| Swissprot | tr|Q8L773|THO4A_ARATH | 6.00E-65 | THO complex subunit 4A |
| trEMBL | tr|M0RHY4|M0RHY4_MUSAM | 1.00E-79 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P13580_001} |
| TAIR | AT5G59950 | 2.00E-64 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 5133918 | 5158661 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002355
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 90 | 158 | 6.40E-16 |
| PF13865.5 | FoP_duplication | 184 | 233 | 1.20E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12881 | THOC4, ALY | Spliceosome | map03040 |
| RNA transport | map03013 | ||
| mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1396.560 |
| SRR2545915 | Juvenile tuber | 894.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 309.210 |
| SRR5643514 | five period of Gastrodia elata | 209.560 | |
| SRR5643515 | five period of Gastrodia elata | 273.370 | |
| SRR5643524 | five period of Gastrodia elata | 208.120 | |
| SRR5643525 | five period of Gastrodia elata | 638.840 | |
| SRR5643528 | five period of Gastrodia elata | 391.560 | |
| SRR5643658 | five period of Gastrodia elata | 491.840 | |
| SRR5643659 | five period of Gastrodia elata | 694.190 | |
| SRR5643660 | five period of Gastrodia elata | 952.930 | |
| SRR5643661 | five period of Gastrodia elata | 755.580 | |
| SRR5643662 | five period of Gastrodia elata | 1166.950 | |
| SRR5643663 | five period of Gastrodia elata | 955.140 | |
| SRR5643664 | five period of Gastrodia elata | 1364.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 555.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 216.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 361.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 767.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 637.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 822.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 546.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 530.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 298.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 401.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 262.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 262.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 720.87 |
| Juven | Juvenile tuber | 178.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 159.98 | |
| Mother_Juven | Mother tuber of Juvenile | 139.90 |