Detail information of GWHGAAEX002357/evm.TU.scaffold_12.112


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17563.00E-67Histone 2A
nrgi|743869048|ref|XP_010905725.1|4.78E-70PREDICTED: histone H2A [Elaeis guineensis]
Swissprottr|P25469|H2A1_SOLLC8.00E-73Histone H2A.1
trEMBLtr|G8IIJ5|G8IIJ5_SOLLC7.00E-71Histone H2A {ECO:0000256|RuleBase:RU003556} (Fragment)
TAIRAT5G025603.00E-67histone H2A 12

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000951911265191651-
Transcript Sequence

Network for GWHGAAEX002357

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone16969.20E-15
PF16211.4Histone_H2A_C991312.20E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0005634Cellular Componentnucleus
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.180
SRR2545915Juvenile tuber5.090
SRP108465SRR5643513five period of Gastrodia elata35.410
SRR5643514five period of Gastrodia elata34.320
SRR5643515five period of Gastrodia elata23.470
SRR5643524five period of Gastrodia elata24.640
SRR5643525five period of Gastrodia elata12.740
SRR5643528five period of Gastrodia elata8.740
SRR5643658five period of Gastrodia elata6.110
SRR5643659five period of Gastrodia elata8.350
SRR5643660five period of Gastrodia elata6.750
SRR5643661five period of Gastrodia elata10.180
SRR5643662five period of Gastrodia elata7.500
SRR5643663five period of Gastrodia elata9.000
SRR5643664five period of Gastrodia elata8.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.050
SRR6049655Rhizomagastrodiae_C368-T10_good_125.740
SRR6049656Rhizomagastrodiae_C368-T07_good_138.430
SRR6049657Rhizomagastrodiae_C368-T07_good_116.910
SRR6049658Rhizomagastrodiae_C368-T04_good_114.750
SRR6049659Rhizomagastrodiae_C368-T04_good_17.150
SRR6049660Rhizomagastrodiae_C368-T01_good_110.820
SRR6049661Rhizomagastrodiae_C368-T04_good_113.260
SRR6049662Rhizomagastrodiae_C368-T01_good_129.740
SRR6049663Rhizomagastrodiae_C368-T01_good_119.360
SRR6049664Rhizomagastrodiae_C368-T10_good_173.170
SRR6049665Rhizomagastrodiae_C368-T10_good_173.170
SRP279888GastroGastrodia elata tuber 1.43
JuvenJuvenile tuber7.34
Mother_GastroMother tuber of Gastrodia elata 8.74
Mother_JuvenMother tuber of Juvenile 1.65